Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WMA entry

There are 2 chains in PDB entry 8WMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 188ASN 513
C
 SER 418ASP 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8WMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
212 244Right-handed alpha
Helix 2
AA2
A
253 276Right-handed alpha
Helix 3
AA3
A
276 281Right-handed alpha
Helix 4
AA4
A
295 298Right-handed 310
Helix 5
AA5
A
299 332Right-handed alpha
Helix 6
AA6
A
340 342Right-handed 310
Helix 7
AA7
A
343 366Right-handed alpha
Helix 8
AA8
A
383 391Right-handed alpha
Helix 9
AA9
A
391 422Right-handed alpha
Helix 10
AB1
A
427 461Right-handed alpha
Helix 11
AB2
A
461 467Right-handed alpha
Helix 12
AB3
A
470 490Right-handed alpha
Helix 13
AB4
A
497 511Right-handed alpha
Helix 14
AB5
C
422 431Right-handed alpha
Helix 15
AB6
C
455 465Right-handed alpha
Helix 16
AB7
C
474 485Right-handed alpha
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There are 3 sheets in PDB entry 8WMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
199 202anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
377 378anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
440 444first strand
Strand 2
C
447 454anti-parallel
Strand 3
C
502 505anti-parallel
Strand 4
C
488 489anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il