Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WMC entry

There are 3 chains in PDB entry 8WMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 3	ALA 750
A	MET 1	ALA 1601
R	U 0	A 37

There are 78 helices in PDB entry 8WMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	14	Right-handed alpha
Helix 2	AA2	B	20	39	Right-handed alpha
Helix 3	AA3	B	41	46	Right-handed 310
Helix 4	AA4	B	52	67	Right-handed alpha
Helix 5	AA5	B	76	88	Right-handed alpha
Helix 6	AA6	B	92	113	Right-handed alpha
Helix 7	AA7	B	117	134	Right-handed alpha
Helix 8	AA8	B	143	164	Right-handed alpha
Helix 9	AA9	B	167	184	Right-handed alpha
Helix 10	AB1	B	191	203	Right-handed alpha
Helix 11	AB2	B	207	222	Right-handed alpha
Helix 12	AB3	B	226	232	Right-handed alpha
Helix 13	AB4	B	239	254	Right-handed alpha
Helix 14	AB5	B	256	270	Right-handed alpha
Helix 15	AB6	B	277	293	Right-handed alpha
Helix 16	AB7	B	297	310	Right-handed alpha
Helix 17	AB8	B	328	340	Right-handed alpha
Helix 18	AB9	B	342	352	Right-handed alpha
Helix 19	AC1	B	360	374	Right-handed alpha
Helix 20	AC2	B	376	393	Right-handed alpha
Helix 21	AC3	B	395	400	Right-handed alpha
Helix 22	AC4	B	415	419	Right-handed 310
Helix 23	AC5	B	431	437	Right-handed alpha
Helix 24	AC6	B	464	482	Right-handed alpha
Helix 25	AC7	B	485	500	Right-handed alpha
Helix 26	AC8	B	501	505	Right-handed 310
Helix 27	AC9	B	520	526	Right-handed 310
Helix 28	AD1	B	527	530	Right-handed 310
Helix 29	AD2	B	544	546	Right-handed 310
Helix 30	AD3	B	554	558	Right-handed 310
Helix 31	AD4	B	580	585	Right-handed alpha
Helix 32	AD5	B	595	606	Right-handed alpha
Helix 33	AD6	B	622	625	Right-handed 310
Helix 34	AD7	B	637	642	Right-handed alpha
Helix 35	AD8	B	657	662	Right-handed alpha
Helix 36	AD9	B	675	683	Right-handed alpha
Helix 37	AE1	B	696	710	Right-handed alpha
Helix 38	AE2	B	712	730	Right-handed alpha
Helix 39	AE3	B	733	741	Right-handed alpha
Helix 40	AE4	A	30	36	Right-handed alpha
Helix 41	AE5	A	57	76	Right-handed alpha
Helix 42	AE6	A	123	130	Right-handed alpha
Helix 43	AE7	A	163	166	Right-handed 310
Helix 44	AE8	A	211	225	Right-handed alpha
Helix 45	AE9	A	261	276	Right-handed alpha
Helix 46	AF1	A	278	280	Right-handed 310
Helix 47	AF2	A	281	292	Right-handed alpha
Helix 48	AF3	A	293	300	Right-handed 310
Helix 49	AF4	A	328	339	Right-handed alpha
Helix 50	AF5	A	344	365	Right-handed alpha
Helix 51	AF6	A	443	460	Right-handed alpha
Helix 52	AF7	A	474	481	Right-handed alpha
Helix 53	AF8	A	542	555	Right-handed alpha
Helix 54	AF9	A	562	566	Right-handed 310
Helix 55	AG1	A	584	595	Right-handed alpha
Helix 56	AG2	A	599	610	Right-handed alpha
Helix 57	AG3	A	642	649	Right-handed alpha
Helix 58	AG4	A	675	689	Right-handed alpha
Helix 59	AG5	A	708	715	Right-handed alpha
Helix 60	AG6	A	780	785	Right-handed alpha
Helix 61	AG7	A	785	801	Right-handed alpha
Helix 62	AG8	A	809	813	Right-handed 310
Helix 63	AG9	A	829	833	Right-handed 310
Helix 64	AH1	A	946	963	Right-handed alpha
Helix 65	AH2	A	1231	1247	Right-handed alpha
Helix 66	AH3	A	1300	1305	Right-handed 310
Helix 67	AH4	A	1306	1310	Right-handed 310
Helix 68	AH5	A	1321	1327	Right-handed 310
Helix 69	AH6	A	1328	1335	Right-handed 310
Helix 70	AH7	A	1342	1349	Right-handed alpha
Helix 71	AH8	A	1395	1399	Right-handed 310
Helix 72	AH9	A	1420	1426	Right-handed alpha
Helix 73	AI1	A	1464	1476	Right-handed alpha
Helix 74	AI2	A	1488	1492	Right-handed 310
Helix 75	AI3	A	1518	1534	Right-handed alpha
Helix 76	AI4	A	1539	1548	Right-handed alpha
Helix 77	AI5	A	1575	1581	Right-handed alpha
Helix 78	AI6	A	1588	1595	Right-handed alpha

There are 23 sheets in PDB entry 8WMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	315	first strand
Strand 2	B	321	324	anti-parallel
Strand 3	B	357	359	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	462	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	424	430	anti-parallel
Strand 4	B	515	518	parallel
Strand 5	B	549	551	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	532	533	first strand
Strand 2	B	541	542	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	573	first strand
Strand 2	B	609	613	parallel
Strand 3	B	652	653	parallel
Strand 4	B	687	690	parallel
Strand 5	B	744	746	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	617	first strand
Strand 2	B	627	630	anti-parallel
Strand 3	B	633	636	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	3	11	anti-parallel
Strand 4	A	231	238	anti-parallel
Strand 5	A	227	228	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	183	192	anti-parallel
Strand 3	A	168	176	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	52	56	anti-parallel
Strand 3	A	153	154	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	394	395	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	569	581	anti-parallel
Strand 5	A	557	558	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	569	581	anti-parallel
Strand 5	A	611	612	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	488	489	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	504	first strand
Strand 2	A	511	521	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	663	first strand
Strand 2	A	668	674	anti-parallel
Strand 3	A	728	730	anti-parallel
Strand 4	A	770	779	anti-parallel
Strand 5	A	723	725	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	663	first strand
Strand 2	A	668	674	anti-parallel
Strand 3	A	728	730	anti-parallel
Strand 4	A	770	779	anti-parallel
Strand 5	A	625	634	anti-parallel
Strand 6	A	817	823	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	693	first strand
Strand 2	A	696	697	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	740	first strand
Strand 2	A	758	759	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	861	862	first strand
Strand 2	A	1558	1559	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	865	868	first strand
Strand 2	A	1412	1415	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1357	1359	first strand
Strand 2	A	1457	1463	anti-parallel
Strand 3	A	891	896	anti-parallel
Strand 4	A	1502	1506	anti-parallel
Strand 5	A	1512	1514	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	945	first strand
Strand 2	A	1362	1364	anti-parallel
Strand 3	A	1453	1455	anti-parallel
Strand 4	A	899	901	anti-parallel
Strand 5	A	1495	1498	anti-parallel
Strand 6	A	1483	1484	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	909	first strand
Strand 2	A	935	936	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	932	933	first strand
Strand 2	A	1443	1445	parallel
Strand 3	A	1386	1387	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMC