Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WMD entry

There is 1 chain in PDB entry 8WMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 19ASP 1139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8WMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
294 304Right-handed alpha
Helix 2
AA2
A
337 342Right-handed alpha
Helix 3
AA3
A
365 372Right-handed alpha
Helix 4
AA4
A
383 387Right-handed 310
Helix 5
AA5
A
405 410Right-handed 310
Helix 6
AA6
A
416 422Right-handed alpha
Helix 7
AA7
A
737 743Right-handed alpha
Helix 8
AA8
A
746 755Right-handed alpha
Helix 9
AA9
A
758 783Right-handed alpha
Helix 10
AB1
A
816 826Right-handed alpha
Helix 11
AB2
A
866 885Right-handed alpha
Helix 12
AB3
A
886 890Right-handed 310
Helix 13
AB4
A
897 910Right-handed alpha
Helix 14
AB5
A
912 918Right-handed alpha
Helix 15
AB6
A
919 941Right-handed alpha
Helix 16
AB7
A
945 965Right-handed alpha
Helix 17
AB8
A
966 968Right-handed 310
Helix 18
AB9
A
976 982Right-handed alpha
Helix 19
AC1
A
985 1033Right-handed alpha
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There are 14 sheets in PDB entry 8WMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
61 66anti-parallel
Strand 3
A
265 269anti-parallel
Strand 4
A
90 94anti-parallel
Strand 5
A
188 197anti-parallel
Strand 6
A
200 209anti-parallel
Strand 7
A
222 229anti-parallel
Strand 8
A
36 37parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 55first strand
Strand 2
A
271 279anti-parallel
Strand 3
A
285 290anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
140 141parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
101 107anti-parallel
Strand 4
A
117 121anti-parallel
Strand 5
A
126 129anti-parallel
Strand 6
A
169 172anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 319first strand
Strand 2
A
592 599anti-parallel
Strand 3
A
609 613anti-parallel
Strand 4
A
648 651anti-parallel
Strand 5
A
642 645anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 327first strand
Strand 2
A
539 543parallel
Strand 3
A
546 554anti-parallel
Strand 4
A
584 588anti-parallel
Strand 5
A
575 577anti-parallel
Strand 6
A
565 566anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
395 403anti-parallel
Strand 3
A
507 514anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 379anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
488 489anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
654 655first strand
Strand 2
A
691 696parallel
Strand 3
A
670 675anti-parallel
Strand 4
A
664 665anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 728first strand
Strand 2
A
1059 1076anti-parallel
Strand 3
A
1047 1056anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
733 736first strand
Strand 2
A
858 861anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1086 1090anti-parallel
Strand 3
A
1081 1083anti-parallel
Strand 4
A
1133 1134parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1094 1097first strand
Strand 2
A
1102 1105anti-parallel
Strand 3
A
1113 1114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il