Analysis of interatomic Contacts of Structural Units in PDB entry:
8WME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WME entry

There are 2 chains in PDB entry 8WME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 21VAL 230
A
 PRO 21VAL 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8WME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
28 30Right-handed 310
Helix 2
AA2
B
31 43Right-handed alpha
Helix 3
AA3
B
47 54Right-handed alpha
Helix 4
AA4
B
58 67Right-handed alpha
Helix 5
AA5
B
68 72Right-handed 310
Helix 6
AA6
B
111 128Right-handed alpha
Helix 7
AA7
B
129 134Right-handed alpha
Helix 8
AA8
B
150 153Right-handed 310
Helix 9
AA9
B
156 172Right-handed alpha
Helix 10
AB1
B
183 193Right-handed alpha
Helix 11
AB2
B
204 206Right-handed 310
Helix 12
AB3
A
28 30Right-handed 310
Helix 13
AB4
A
31 42Right-handed alpha
Helix 14
AB5
A
42 47Right-handed alpha
Helix 15
AB6
A
47 54Right-handed alpha
Helix 16
AB7
A
58 67Right-handed alpha
Helix 17
AB8
A
68 72Right-handed 310
Helix 18
AB9
A
111 128Right-handed alpha
Helix 19
AC1
A
129 134Right-handed alpha
Helix 20
AC2
A
150 153Right-handed 310
Helix 21
AC3
A
156 172Right-handed alpha
Helix 22
AC4
A
183 193Right-handed alpha
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There are 2 sheets in PDB entry 8WME. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
84 94anti-parallel
Strand 4
B
139 148anti-parallel
Strand 5
B
176 181parallel
Strand 6
B
222 229anti-parallel
Strand 7
B
196 202anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
84 94anti-parallel
Strand 4
A
139 148anti-parallel
Strand 5
A
176 181parallel
Strand 6
A
222 229anti-parallel
Strand 7
A
196 202anti-parallel
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