Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WMH entry

There are 4 chains in PDB entry 8WMH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 1428
O	G 13	U 123
C	C 35	T 60
E	A 3	G 28

There are 50 helices in PDB entry 8WMH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	27	Right-handed 310
Helix 2	AA2	A	42	49	Right-handed alpha
Helix 3	AA3	A	56	88	Right-handed alpha
Helix 4	AA4	A	92	98	Right-handed alpha
Helix 5	AA5	A	129	144	Right-handed alpha
Helix 6	AA6	A	150	152	Right-handed 310
Helix 7	AA7	A	153	162	Right-handed alpha
Helix 8	AA8	A	168	182	Right-handed alpha
Helix 9	AA9	A	273	288	Right-handed alpha
Helix 10	AB1	A	291	303	Right-handed alpha
Helix 11	AB2	A	317	334	Right-handed alpha
Helix 12	AB3	A	335	340	Right-handed 310
Helix 13	AB4	A	341	353	Right-handed alpha
Helix 14	AB5	A	356	364	Right-handed alpha
Helix 15	AB6	A	367	373	Right-handed alpha
Helix 16	AB7	A	386	390	Right-handed 310
Helix 17	AB8	A	419	434	Right-handed alpha
Helix 18	AB9	A	452	465	Right-handed alpha
Helix 19	AC1	A	470	478	Right-handed alpha
Helix 20	AC2	A	498	511	Right-handed alpha
Helix 21	AC3	A	520	534	Right-handed alpha
Helix 22	AC4	A	536	551	Right-handed alpha
Helix 23	AC5	A	557	563	Right-handed alpha
Helix 24	AC6	A	576	588	Right-handed alpha
Helix 25	AC7	A	589	593	Right-handed 310
Helix 26	AC8	A	594	598	Right-handed 310
Helix 27	AC9	A	599	612	Right-handed alpha
Helix 28	AD1	A	619	626	Right-handed alpha
Helix 29	AD2	A	627	629	Right-handed 310
Helix 30	AD3	A	631	635	Right-handed 310
Helix 31	AD4	A	639	648	Right-handed alpha
Helix 32	AD5	A	662	672	Right-handed alpha
Helix 33	AD6	A	680	703	Right-handed alpha
Helix 34	AD7	A	931	935	Right-handed 310
Helix 35	AD8	A	936	943	Right-handed alpha
Helix 36	AD9	A	965	976	Right-handed alpha
Helix 37	AE1	A	977	997	Right-handed alpha
Helix 38	AE2	A	1017	1021	Right-handed 310
Helix 39	AE3	A	1025	1030	Right-handed 310
Helix 40	AE4	A	1031	1044	Right-handed alpha
Helix 41	AE5	A	1045	1054	Right-handed alpha
Helix 42	AE6	A	1063	1070	Right-handed alpha
Helix 43	AE7	A	1101	1112	Right-handed alpha
Helix 44	AE8	A	1193	1198	Right-handed alpha
Helix 45	AE9	A	1203	1216	Right-handed alpha
Helix 46	AF1	A	1219	1224	Right-handed alpha
Helix 47	AF2	A	1225	1235	Right-handed alpha
Helix 48	AF3	A	1265	1270	Right-handed 310
Helix 49	AF4	A	1299	1309	Right-handed alpha
Helix 50	AF5	A	1353	1358	Right-handed alpha

There are 15 sheets in PDB entry 8WMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	715	first strand
Strand 2	A	3	10	parallel
Strand 3	A	14	23	anti-parallel
Strand 4	A	28	38	anti-parallel
Strand 5	A	1116	1117	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	107	108	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	121	first strand
Strand 2	A	124	127	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	204	first strand
Strand 2	A	247	251	anti-parallel
Strand 3	A	267	268	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	215	first strand
Strand 2	A	220	222	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	400	first strand
Strand 2	A	408	413	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	438	first strand
Strand 2	A	485	486	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	469	first strand
Strand 2	A	495	496	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1071	1072	first strand
Strand 2	A	1094	1095	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1124	1126	first strand
Strand 2	A	1153	1155	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1130	1137	first strand
Strand 2	A	1140	1147	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1166	1168	first strand
Strand 2	A	1180	1187	anti-parallel
Strand 3	A	1250	1257	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1260	1261	first strand
Strand 2	A	1272	1273	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1293	1298	first strand
Strand 2	A	1282	1287	anti-parallel
Strand 3	A	1323	1328	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1370	1375	first strand
Strand 2	A	1360	1367	anti-parallel
Strand 3	A	1333	1335	anti-parallel
Strand 4	A	1416	1417	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WMH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMH