Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WMI entry

There are 2 chains in PDB entry 8WMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 U 0 A 38
A
 MET 1ALA 1601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8WMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
30 36Right-handed alpha
Helix 3
AA3
A
57 76Right-handed alpha
Helix 4
AA4
A
123 130Right-handed alpha
Helix 5
AA5
A
163 168Right-handed alpha
Helix 6
AA6
A
211 225Right-handed alpha
Helix 7
AA7
A
262 277Right-handed alpha
Helix 8
AA8
A
278 280Right-handed 310
Helix 9
AA9
A
281 291Right-handed alpha
Helix 10
AB1
A
292 294Right-handed 310
Helix 11
AB2
A
295 299Right-handed 310
Helix 12
AB3
A
329 338Right-handed alpha
Helix 13
AB4
A
344 364Right-handed alpha
Helix 14
AB5
A
443 460Right-handed alpha
Helix 15
AB6
A
474 481Right-handed alpha
Helix 16
AB7
A
542 555Right-handed alpha
Helix 17
AB8
A
586 594Right-handed alpha
Helix 18
AB9
A
595 598Right-handed 310
Helix 19
AC1
A
599 608Right-handed alpha
Helix 20
AC2
A
643 648Right-handed 310
Helix 21
AC3
A
675 691Right-handed alpha
Helix 22
AC4
A
708 715Right-handed alpha
Helix 23
AC5
A
780 785Right-handed alpha
Helix 24
AC6
A
785 801Right-handed alpha
Helix 25
AC7
A
946 962Right-handed alpha
Helix 26
AC8
A
1232 1245Right-handed alpha
Helix 27
AC9
A
1300 1304Right-handed 310
Helix 28
AD1
A
1342 1349Right-handed alpha
Helix 29
AD2
A
1395 1399Right-handed 310
Helix 30
AD3
A
1420 1426Right-handed alpha
Helix 31
AD4
A
1464 1477Right-handed alpha
Helix 32
AD5
A
1488 1492Right-handed 310
Helix 33
AD6
A
1518 1534Right-handed alpha
Helix 34
AD7
A
1538 1548Right-handed alpha
Helix 35
AD8
A
1588 1593Right-handed alpha
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There are 17 sheets in PDB entry 8WMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
204 205anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
233 236anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
15 18parallel
Strand 4
A
187 192anti-parallel
Strand 5
A
169 173anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
579 581anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 531first strand
Strand 2
A
407 412anti-parallel
Strand 3
A
570 577anti-parallel
Strand 4
A
611 612anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
488 489anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 504first strand
Strand 2
A
511 521anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 661first strand
Strand 2
A
670 674anti-parallel
Strand 3
A
728 730anti-parallel
Strand 4
A
770 779anti-parallel
Strand 5
A
723 724anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 661first strand
Strand 2
A
670 674anti-parallel
Strand 3
A
728 730anti-parallel
Strand 4
A
770 779anti-parallel
Strand 5
A
625 634anti-parallel
Strand 6
A
817 823anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
655 656first strand
Strand 2
A
758 760parallel
Strand 3
A
739 740anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
861 862first strand
Strand 2
A
1558 1559parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
865 868first strand
Strand 2
A
1412 1415anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1357 1358first strand
Strand 2
A
1453 1463anti-parallel
Strand 3
A
1363 1364anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1357 1358first strand
Strand 2
A
1453 1463anti-parallel
Strand 3
A
891 901anti-parallel
Strand 4
A
1496 1506anti-parallel
Strand 5
A
1512 1513anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
932 933first strand
Strand 2
A
1443 1445parallel
Strand 3
A
1386 1387anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
976 978first strand
Strand 2
A
1294 1296anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1227 1228first strand
Strand 2
A
1001 1004anti-parallel
Strand 3
A
991 997anti-parallel
Strand 4
A
1274 1277anti-parallel
Strand 5
A
1287 1288anti-parallel
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