Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WMJ entry

There are 25 chains in PDB entry 8WMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 11	GLY 754
B	THR 2	GLY 733
C	SER 2	TYR 81
D	GLU 3	GLY 141
E	VAL 2	VAL 61
F	ASP 28	ARG 188
I	MET 1	GLU 34
J	MET 1	MET 42
L	SER 2	LEU 152
M	MET 1	GLN 30
K	VAL 10	LEU 86
s	ASP 1	LYS 154
c	ASP 43	PHE 212
a	GLU 42	LYS 216
b	ALA 29	TYR 222
h	PHE 64	TYR 225
m	ALA 37	PHE 210
l	ASP 37	ALA 211
k	ARG 47	PRO 226
i	ASP 39	SER 218
j	MET 38	ASN 209
d	VAL 57	SER 219
R	PHE 41	LYS 132
n	LEU 38	LEU 218
Q	ALA 56	ASN 234

There are196 helices in PDB entry 8WMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	46	56	Right-handed alpha
Helix 3	AA3	A	58	62	Right-handed 310
Helix 4	AA4	A	65	98	Right-handed alpha
Helix 5	AA5	A	100	107	Right-handed alpha
Helix 6	AA6	A	123	128	Right-handed 310
Helix 7	AA7	A	143	152	Right-handed alpha
Helix 8	AA8	A	155	183	Right-handed alpha
Helix 9	AA9	A	187	194	Right-handed alpha
Helix 10	AB1	A	195	205	Right-handed alpha
Helix 11	AB2	A	206	222	Right-handed alpha
Helix 12	AB3	A	222	233	Right-handed alpha
Helix 13	AB4	A	235	239	Right-handed 310
Helix 14	AB5	A	241	248	Right-handed alpha
Helix 15	AB6	A	248	256	Right-handed alpha
Helix 16	AB7	A	257	261	Right-handed 310
Helix 17	AB8	A	263	268	Right-handed alpha
Helix 18	AB9	A	270	277	Right-handed 310
Helix 19	AC1	A	292	311	Right-handed alpha
Helix 20	AC2	A	323	331	Right-handed alpha
Helix 21	AC3	A	342	348	Right-handed alpha
Helix 22	AC4	A	350	376	Right-handed alpha
Helix 23	AC5	A	385	418	Right-handed alpha
Helix 24	AC6	A	427	434	Right-handed alpha
Helix 25	AC7	A	435	467	Right-handed alpha
Helix 26	AC8	A	469	473	Right-handed 310
Helix 27	AC9	A	483	496	Right-handed alpha
Helix 28	AD1	A	509	513	Right-handed 310
Helix 29	AD2	A	531	558	Right-handed alpha
Helix 30	AD3	A	567	572	Right-handed alpha
Helix 31	AD4	A	589	620	Right-handed alpha
Helix 32	AD5	A	626	628	Right-handed 310
Helix 33	AD6	A	637	642	Right-handed alpha
Helix 34	AD7	A	644	651	Right-handed alpha
Helix 35	AD8	A	652	657	Right-handed alpha
Helix 36	AD9	A	657	662	Right-handed alpha
Helix 37	AE1	A	668	691	Right-handed alpha
Helix 38	AE2	A	692	710	Right-handed alpha
Helix 39	AE3	A	722	754	Right-handed alpha
Helix 40	AE4	B	8	13	Right-handed alpha
Helix 41	AE5	B	17	26	Right-handed alpha
Helix 42	AE6	B	29	33	Right-handed 310
Helix 43	AE7	B	37	71	Right-handed alpha
Helix 44	AE8	B	72	79	Right-handed alpha
Helix 45	AE9	B	96	103	Right-handed alpha
Helix 46	AF1	B	118	126	Right-handed alpha
Helix 47	AF2	B	130	155	Right-handed alpha
Helix 48	AF3	B	163	168	Right-handed alpha
Helix 49	AF4	B	169	180	Right-handed alpha
Helix 50	AF5	B	182	196	Right-handed alpha
Helix 51	AF6	B	196	202	Right-handed alpha
Helix 52	AF7	B	223	227	Right-handed 310
Helix 53	AF8	B	228	233	Right-handed 310
Helix 54	AF9	B	268	287	Right-handed alpha
Helix 55	AG1	B	299	307	Right-handed alpha
Helix 56	AG2	B	320	328	Right-handed alpha
Helix 57	AG3	B	328	354	Right-handed alpha
Helix 58	AG4	B	363	396	Right-handed alpha
Helix 59	AG5	B	405	413	Right-handed alpha
Helix 60	AG6	B	413	445	Right-handed alpha
Helix 61	AG7	B	447	451	Right-handed 310
Helix 62	AG8	B	456	466	Right-handed alpha
Helix 63	AG9	B	475	479	Right-handed 310
Helix 64	AH1	B	482	490	Right-handed alpha
Helix 65	AH2	B	492	502	Right-handed alpha
Helix 66	AH3	B	512	539	Right-handed alpha
Helix 67	AH4	B	548	553	Right-handed 310
Helix 68	AH5	B	570	603	Right-handed alpha
Helix 69	AH6	B	604	612	Right-handed alpha
Helix 70	AH7	B	614	622	Right-handed alpha
Helix 71	AH8	B	622	632	Right-handed alpha
Helix 72	AH9	B	642	665	Right-handed alpha
Helix 73	AI1	B	666	684	Right-handed alpha
Helix 74	AI2	B	700	732	Right-handed alpha
Helix 75	AI3	C	15	21	Right-handed alpha
Helix 76	AI4	C	52	58	Right-handed alpha
Helix 77	AI5	D	22	28	Right-handed alpha
Helix 78	AI6	D	64	78	Right-handed alpha
Helix 79	AI7	D	122	126	Right-handed 310
Helix 80	AI8	E	54	56	Right-handed 310
Helix 81	AI9	F	28	32	Right-handed 310
Helix 82	AJ1	F	38	57	Right-handed alpha
Helix 83	AJ2	F	63	85	Right-handed alpha
Helix 84	AJ3	F	103	107	Right-handed 310
Helix 85	AJ4	F	110	137	Right-handed alpha
Helix 86	AJ5	F	142	147	Right-handed alpha
Helix 87	AJ6	F	149	159	Right-handed alpha
Helix 88	AJ7	F	162	173	Right-handed alpha
Helix 89	AJ8	F	179	183	Right-handed 310
Helix 90	AJ9	I	4	16	Right-handed alpha
Helix 91	AK1	I	16	32	Right-handed alpha
Helix 92	AK2	J	2	10	Right-handed alpha
Helix 93	AK3	J	11	34	Right-handed alpha
Helix 94	AK4	L	9	11	Right-handed 310
Helix 95	AK5	L	19	24	Right-handed alpha
Helix 96	AK6	L	24	34	Right-handed alpha
Helix 97	AK7	L	35	38	Right-handed 310
Helix 98	AK8	L	42	66	Right-handed alpha
Helix 99	AK9	L	73	101	Right-handed alpha
Helix 100	AL1	L	112	141	Right-handed alpha
Helix 101	AL2	L	141	146	Right-handed alpha
Helix 102	AL3	M	3	30	Right-handed alpha
Helix 103	AL4	K	17	39	Right-handed alpha
Helix 104	AL5	K	58	84	Right-handed alpha
Helix 105	AL6	s	39	44	Right-handed alpha
Helix 106	AL7	s	45	65	Right-handed alpha
Helix 107	AL8	s	81	85	Right-handed 310
Helix 108	AL9	s	98	103	Right-handed alpha
Helix 109	AM1	s	143	153	Right-handed alpha
Helix 110	AM2	c	77	105	Right-handed alpha
Helix 111	AM3	c	114	126	Right-handed alpha
Helix 112	AM4	c	126	151	Right-handed alpha
Helix 113	AM5	c	169	201	Right-handed alpha
Helix 114	AM6	c	204	211	Right-handed alpha
Helix 115	AM7	a	70	75	Right-handed alpha
Helix 116	AM8	a	76	100	Right-handed alpha
Helix 117	AM9	a	101	103	Right-handed 310
Helix 118	AN1	a	115	123	Right-handed alpha
Helix 119	AN2	a	124	148	Right-handed alpha
Helix 120	AN3	a	168	200	Right-handed alpha
Helix 121	AN4	a	203	210	Right-handed alpha
Helix 122	AN5	b	63	90	Right-handed alpha
Helix 123	AN6	b	95	99	Right-handed 310
Helix 124	AN7	b	102	110	Right-handed alpha
Helix 125	AN8	b	111	130	Right-handed alpha
Helix 126	AN9	b	163	192	Right-handed alpha
Helix 127	AO1	b	195	202	Right-handed alpha
Helix 128	AO2	h	64	68	Right-handed 310
Helix 129	AO3	h	72	99	Right-handed alpha
Helix 130	AO4	h	110	115	Right-handed alpha
Helix 131	AO5	h	116	119	Right-handed 310
Helix 132	AO6	h	129	152	Right-handed alpha
Helix 133	AO7	h	183	209	Right-handed alpha
Helix 134	AO8	h	211	220	Right-handed alpha
Helix 135	AO9	m	65	70	Right-handed alpha
Helix 136	AP1	m	71	99	Right-handed alpha
Helix 137	AP2	m	103	108	Right-handed alpha
Helix 138	AP3	m	114	123	Right-handed alpha
Helix 139	AP4	m	124	150	Right-handed alpha
Helix 140	AP5	m	167	200	Right-handed alpha
Helix 141	AP6	m	202	209	Right-handed alpha
Helix 142	AP7	l	69	97	Right-handed alpha
Helix 143	AP8	l	110	115	Right-handed alpha
Helix 144	AP9	l	116	135	Right-handed alpha
Helix 145	AQ1	l	140	145	Right-handed alpha
Helix 146	AQ2	l	146	148	Right-handed 310
Helix 147	AQ3	l	164	197	Right-handed alpha
Helix 148	AQ4	l	199	206	Right-handed alpha
Helix 149	AQ5	k	78	106	Right-handed alpha
Helix 150	AQ6	k	110	116	Right-handed alpha
Helix 151	AQ7	k	119	134	Right-handed alpha
Helix 152	AQ8	k	139	155	Right-handed alpha
Helix 153	AQ9	k	155	164	Right-handed alpha
Helix 154	AR1	k	179	184	Right-handed alpha
Helix 155	AR2	k	187	214	Right-handed alpha
Helix 156	AR3	k	217	224	Right-handed alpha
Helix 157	AR4	i	67	72	Right-handed alpha
Helix 158	AR5	i	73	101	Right-handed alpha
Helix 159	AR6	i	112	120	Right-handed alpha
Helix 160	AR7	i	121	139	Right-handed alpha
Helix 161	AR8	i	140	143	Right-handed 310
Helix 162	AR9	i	170	203	Right-handed alpha
Helix 163	AS1	i	205	212	Right-handed alpha
Helix 164	AS2	j	65	70	Right-handed alpha
Helix 165	AS3	j	71	99	Right-handed alpha
Helix 166	AS4	j	103	108	Right-handed alpha
Helix 167	AS5	j	113	123	Right-handed alpha
Helix 168	AS6	j	124	150	Right-handed alpha
Helix 169	AS7	j	169	200	Right-handed alpha
Helix 170	AS8	j	202	209	Right-handed alpha
Helix 171	AS9	d	67	71	Right-handed 310
Helix 172	AT1	d	73	101	Right-handed alpha
Helix 173	AT2	d	117	127	Right-handed alpha
Helix 174	AT3	d	127	153	Right-handed alpha
Helix 175	AT4	d	181	210	Right-handed alpha
Helix 176	AT5	d	212	219	Right-handed alpha
Helix 177	AT6	R	61	69	Right-handed 310
Helix 178	AT7	R	72	93	Right-handed alpha
Helix 179	AT8	R	102	110	Right-handed alpha
Helix 180	AT9	R	110	129	Right-handed alpha
Helix 181	AU1	n	75	80	Right-handed alpha
Helix 182	AU2	n	81	109	Right-handed alpha
Helix 183	AU3	n	114	119	Right-handed alpha
Helix 184	AU4	n	124	136	Right-handed alpha
Helix 185	AU5	n	136	152	Right-handed alpha
Helix 186	AU6	n	152	163	Right-handed alpha
Helix 187	AU7	n	181	186	Right-handed alpha
Helix 188	AU8	n	186	214	Right-handed alpha
Helix 189	AU9	Q	84	88	Right-handed 310
Helix 190	AV1	Q	91	110	Right-handed alpha
Helix 191	AV2	Q	110	123	Right-handed alpha
Helix 192	AV3	Q	130	141	Right-handed alpha
Helix 193	AV4	Q	141	158	Right-handed alpha
Helix 194	AV5	Q	159	164	Right-handed 310
Helix 195	AV6	Q	183	204	Right-handed alpha
Helix 196	AV7	Q	205	228	Right-handed alpha

There are 15 sheets in PDB entry 8WMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	519	first strand
Strand 2	A	522	525	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	624	first strand
Strand 2	A	630	632	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	89	first strand
Strand 2	B	112	114	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	635	first strand
Strand 2	B	638	639	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	118	119	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	62	first strand
Strand 2	D	30	37	anti-parallel
Strand 3	D	85	89	anti-parallel
Strand 4	D	95	99	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	50	53	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	53	first strand
Strand 2	E	36	39	anti-parallel
Strand 3	E	21	27	anti-parallel
Strand 4	E	7	10	anti-parallel
Strand 5	E	58	60	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	89	90	anti-parallel
Strand 3	F	96	97	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	17	18	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	68	71	first strand
Strand 2	s	77	80	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	124	125	first strand
Strand 2	b	91	92	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMJ