Analysis of interatomic Contacts of Structural Units in PDB entry:
8WML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WML entry

There are 3 chains in PDB entry 8WML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	U 0	A 37
A	MET 1	ALA 1601
B	ASN 3	ASP 65

There are 47 helices in PDB entry 8WML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	36	Right-handed alpha
Helix 2	AA2	A	57	76	Right-handed alpha
Helix 3	AA3	A	123	130	Right-handed alpha
Helix 4	AA4	A	163	167	Right-handed alpha
Helix 5	AA5	A	211	225	Right-handed alpha
Helix 6	AA6	A	261	276	Right-handed alpha
Helix 7	AA7	A	281	292	Right-handed alpha
Helix 8	AA8	A	293	295	Right-handed 310
Helix 9	AA9	A	296	301	Right-handed alpha
Helix 10	AB1	A	305	309	Right-handed 310
Helix 11	AB2	A	328	339	Right-handed alpha
Helix 12	AB3	A	340	343	Right-handed 310
Helix 13	AB4	A	344	365	Right-handed alpha
Helix 14	AB5	A	443	460	Right-handed alpha
Helix 15	AB6	A	474	481	Right-handed alpha
Helix 16	AB7	A	542	555	Right-handed alpha
Helix 17	AB8	A	562	566	Right-handed 310
Helix 18	AB9	A	584	595	Right-handed alpha
Helix 19	AC1	A	599	608	Right-handed alpha
Helix 20	AC2	A	642	649	Right-handed alpha
Helix 21	AC3	A	675	689	Right-handed alpha
Helix 22	AC4	A	708	715	Right-handed alpha
Helix 23	AC5	A	780	784	Right-handed alpha
Helix 24	AC6	A	785	801	Right-handed alpha
Helix 25	AC7	A	809	813	Right-handed 310
Helix 26	AC8	A	946	962	Right-handed alpha
Helix 27	AC9	A	1025	1031	Right-handed alpha
Helix 28	AD1	A	1165	1169	Right-handed 310
Helix 29	AD2	A	1231	1247	Right-handed alpha
Helix 30	AD3	A	1254	1258	Right-handed 310
Helix 31	AD4	A	1259	1264	Right-handed alpha
Helix 32	AD5	A	1300	1304	Right-handed 310
Helix 33	AD6	A	1328	1336	Right-handed 310
Helix 34	AD7	A	1342	1349	Right-handed alpha
Helix 35	AD8	A	1395	1400	Right-handed alpha
Helix 36	AD9	A	1420	1427	Right-handed alpha
Helix 37	AE1	A	1464	1476	Right-handed alpha
Helix 38	AE2	A	1488	1492	Right-handed 310
Helix 39	AE3	A	1518	1532	Right-handed alpha
Helix 40	AE4	A	1538	1548	Right-handed alpha
Helix 41	AE5	A	1565	1569	Right-handed 310
Helix 42	AE6	A	1575	1581	Right-handed alpha
Helix 43	AE7	A	1588	1595	Right-handed alpha
Helix 44	AE8	B	4	15	Right-handed alpha
Helix 45	AE9	B	19	39	Right-handed alpha
Helix 46	AF1	B	41	46	Right-handed 310
Helix 47	AF2	B	52	64	Right-handed alpha

There are 21 sheets in PDB entry 8WML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	150	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	4	11	anti-parallel
Strand 4	A	233	237	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	183	192	anti-parallel
Strand 3	A	168	176	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	54	55	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	569	581	anti-parallel
Strand 5	A	557	558	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	485	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	402	412	anti-parallel
Strand 4	A	569	581	anti-parallel
Strand 5	A	611	612	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	442	first strand
Strand 2	A	488	489	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	504	first strand
Strand 2	A	511	521	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	724	first strand
Strand 2	A	770	779	anti-parallel
Strand 3	A	625	634	anti-parallel
Strand 4	A	817	823	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	661	first strand
Strand 2	A	670	674	anti-parallel
Strand 3	A	728	729	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	744	first strand
Strand 2	A	751	759	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	865	868	first strand
Strand 2	A	1412	1415	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	945	first strand
Strand 2	A	1362	1364	anti-parallel
Strand 3	A	1453	1463	anti-parallel
Strand 4	A	1357	1359	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	945	first strand
Strand 2	A	1362	1364	anti-parallel
Strand 3	A	1453	1463	anti-parallel
Strand 4	A	891	901	anti-parallel
Strand 5	A	1495	1505	anti-parallel
Strand 6	A	1483	1484	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	909	first strand
Strand 2	A	935	936	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	932	933	first strand
Strand 2	A	1443	1445	parallel
Strand 3	A	1386	1387	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	978	first strand
Strand 2	A	1294	1296	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	993	994	first strand
Strand 2	A	1001	1012	anti-parallel
Strand 3	A	1215	1222	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	993	994	first strand
Strand 2	A	1001	1012	anti-parallel
Strand 3	A	1228	1229	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1092	1097	first strand
Strand 2	A	1082	1087	anti-parallel
Strand 3	A	1067	1075	anti-parallel
Strand 4	A	1116	1130	anti-parallel
Strand 5	A	1035	1047	anti-parallel
Strand 6	A	1144	1146	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1187	1190	first strand
Strand 2	A	1195	1201	anti-parallel
Strand 3	A	1209	1211	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1276	1279	first strand
Strand 2	A	1284	1288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WML

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WML