Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WMM entry

There are 10 chains in PDB entry 8WMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 1442
B	MET 1	ARG 1442
C	C 28	C 55
D	G 1	U 123
F	C 28	C 55
G	LEU 3	LEU 136
H	LEU 3	LEU 136
O	G 1	U 123
S	A 12	G 21
Y	A 12	G 21

There are112 helices in PDB entry 8WMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	27	Right-handed 310
Helix 2	AA2	A	42	50	Right-handed alpha
Helix 3	AA3	A	56	89	Right-handed alpha
Helix 4	AA4	A	92	97	Right-handed alpha
Helix 5	AA5	A	129	144	Right-handed alpha
Helix 6	AA6	A	150	152	Right-handed 310
Helix 7	AA7	A	153	163	Right-handed alpha
Helix 8	AA8	A	168	182	Right-handed alpha
Helix 9	AA9	A	273	288	Right-handed alpha
Helix 10	AB1	A	291	303	Right-handed alpha
Helix 11	AB2	A	317	334	Right-handed alpha
Helix 12	AB3	A	335	340	Right-handed 310
Helix 13	AB4	A	341	353	Right-handed alpha
Helix 14	AB5	A	356	364	Right-handed alpha
Helix 15	AB6	A	367	374	Right-handed alpha
Helix 16	AB7	A	386	390	Right-handed 310
Helix 17	AB8	A	419	434	Right-handed alpha
Helix 18	AB9	A	452	466	Right-handed alpha
Helix 19	AC1	A	470	478	Right-handed alpha
Helix 20	AC2	A	498	512	Right-handed alpha
Helix 21	AC3	A	520	534	Right-handed alpha
Helix 22	AC4	A	536	551	Right-handed alpha
Helix 23	AC5	A	557	563	Right-handed alpha
Helix 24	AC6	A	576	588	Right-handed alpha
Helix 25	AC7	A	589	593	Right-handed 310
Helix 26	AC8	A	594	598	Right-handed 310
Helix 27	AC9	A	599	612	Right-handed alpha
Helix 28	AD1	A	619	626	Right-handed alpha
Helix 29	AD2	A	631	635	Right-handed 310
Helix 30	AD3	A	639	649	Right-handed alpha
Helix 31	AD4	A	662	672	Right-handed alpha
Helix 32	AD5	A	680	703	Right-handed alpha
Helix 33	AD6	A	932	943	Right-handed alpha
Helix 34	AD7	A	965	976	Right-handed alpha
Helix 35	AD8	A	977	998	Right-handed alpha
Helix 36	AD9	A	1017	1021	Right-handed 310
Helix 37	AE1	A	1031	1044	Right-handed alpha
Helix 38	AE2	A	1045	1054	Right-handed alpha
Helix 39	AE3	A	1059	1070	Right-handed alpha
Helix 40	AE4	A	1101	1111	Right-handed alpha
Helix 41	AE5	A	1193	1198	Right-handed alpha
Helix 42	AE6	A	1202	1216	Right-handed alpha
Helix 43	AE7	A	1219	1224	Right-handed alpha
Helix 44	AE8	A	1225	1235	Right-handed alpha
Helix 45	AE9	A	1265	1270	Right-handed 310
Helix 46	AF1	A	1299	1309	Right-handed alpha
Helix 47	AF2	A	1353	1358	Right-handed alpha
Helix 48	AF3	A	1410	1415	Right-handed alpha
Helix 49	AF4	A	1430	1440	Right-handed alpha
Helix 50	AF5	B	42	50	Right-handed alpha
Helix 51	AF6	B	56	89	Right-handed alpha
Helix 52	AF7	B	92	97	Right-handed alpha
Helix 53	AF8	B	129	144	Right-handed alpha
Helix 54	AF9	B	150	152	Right-handed 310
Helix 55	AG1	B	153	163	Right-handed alpha
Helix 56	AG2	B	168	182	Right-handed alpha
Helix 57	AG3	B	273	289	Right-handed alpha
Helix 58	AG4	B	291	303	Right-handed alpha
Helix 59	AG5	B	317	333	Right-handed alpha
Helix 60	AG6	B	334	335	Right-handed 310
Helix 61	AG7	B	336	340	Right-handed 310
Helix 62	AG8	B	341	353	Right-handed alpha
Helix 63	AG9	B	356	365	Right-handed alpha
Helix 64	AH1	B	367	374	Right-handed alpha
Helix 65	AH2	B	386	390	Right-handed 310
Helix 66	AH3	B	419	434	Right-handed alpha
Helix 67	AH4	B	452	465	Right-handed alpha
Helix 68	AH5	B	470	478	Right-handed alpha
Helix 69	AH6	B	481	483	Right-handed 310
Helix 70	AH7	B	498	511	Right-handed alpha
Helix 71	AH8	B	520	534	Right-handed alpha
Helix 72	AH9	B	536	551	Right-handed alpha
Helix 73	AI1	B	556	562	Right-handed alpha
Helix 74	AI2	B	576	588	Right-handed alpha
Helix 75	AI3	B	589	593	Right-handed 310
Helix 76	AI4	B	594	598	Right-handed 310
Helix 77	AI5	B	599	612	Right-handed alpha
Helix 78	AI6	B	619	626	Right-handed alpha
Helix 79	AI7	B	627	629	Right-handed 310
Helix 80	AI8	B	631	635	Right-handed 310
Helix 81	AI9	B	639	649	Right-handed alpha
Helix 82	AJ1	B	662	672	Right-handed alpha
Helix 83	AJ2	B	680	703	Right-handed alpha
Helix 84	AJ3	B	932	943	Right-handed alpha
Helix 85	AJ4	B	965	976	Right-handed alpha
Helix 86	AJ5	B	977	998	Right-handed alpha
Helix 87	AJ6	B	1017	1021	Right-handed 310
Helix 88	AJ7	B	1031	1044	Right-handed alpha
Helix 89	AJ8	B	1045	1054	Right-handed alpha
Helix 90	AJ9	B	1059	1070	Right-handed alpha
Helix 91	AK1	B	1101	1111	Right-handed alpha
Helix 92	AK2	B	1193	1198	Right-handed alpha
Helix 93	AK3	B	1202	1216	Right-handed alpha
Helix 94	AK4	B	1219	1224	Right-handed alpha
Helix 95	AK5	B	1225	1235	Right-handed alpha
Helix 96	AK6	B	1265	1270	Right-handed 310
Helix 97	AK7	B	1299	1309	Right-handed alpha
Helix 98	AK8	B	1353	1358	Right-handed alpha
Helix 99	AK9	B	1410	1415	Right-handed alpha
Helix 100	AL1	B	1430	1440	Right-handed alpha
Helix 101	AL2	G	9	18	Right-handed alpha
Helix 102	AL3	G	21	33	Right-handed alpha
Helix 103	AL4	G	40	53	Right-handed alpha
Helix 104	AL5	G	57	72	Right-handed alpha
Helix 105	AL6	G	81	93	Right-handed alpha
Helix 106	AL7	G	96	109	Right-handed alpha
Helix 107	AL8	H	9	18	Right-handed alpha
Helix 108	AL9	H	21	33	Right-handed alpha
Helix 109	AM1	H	40	53	Right-handed alpha
Helix 110	AM2	H	57	72	Right-handed alpha
Helix 111	AM3	H	81	93	Right-handed alpha
Helix 112	AM4	H	96	109	Right-handed alpha

There are 35 sheets in PDB entry 8WMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	961	963	first strand
Strand 2	A	711	715	parallel
Strand 3	A	3	10	parallel
Strand 4	A	14	23	anti-parallel
Strand 5	A	28	38	anti-parallel
Strand 6	A	1116	1117	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	121	first strand
Strand 2	A	124	127	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	205	first strand
Strand 2	A	246	251	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	216	first strand
Strand 2	A	219	222	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	230	231	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	260	261	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	401	first strand
Strand 2	A	407	413	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	438	first strand
Strand 2	A	485	486	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	469	first strand
Strand 2	A	495	496	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1003	1006	first strand
Strand 2	A	1011	1014	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1071	1072	first strand
Strand 2	A	1094	1095	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1124	1126	first strand
Strand 2	A	1153	1155	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1130	1137	first strand
Strand 2	A	1140	1147	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1166	1168	first strand
Strand 2	A	1180	1187	anti-parallel
Strand 3	A	1250	1257	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1260	1261	first strand
Strand 2	A	1272	1273	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1293	1297	first strand
Strand 2	A	1283	1287	anti-parallel
Strand 3	A	1323	1328	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1370	1375	first strand
Strand 2	A	1360	1367	anti-parallel
Strand 3	A	1333	1335	anti-parallel
Strand 4	A	1416	1420	anti-parallel
Strand 5	A	1426	1427	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	961	963	first strand
Strand 2	B	711	715	parallel
Strand 3	B	3	10	parallel
Strand 4	B	14	23	anti-parallel
Strand 5	B	28	38	anti-parallel
Strand 6	B	1116	1117	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	107	108	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	121	first strand
Strand 2	B	124	127	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	205	first strand
Strand 2	B	246	251	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	216	first strand
Strand 2	B	219	222	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	400	first strand
Strand 2	B	408	413	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	438	first strand
Strand 2	B	485	486	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	469	first strand
Strand 2	B	495	496	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1003	1006	first strand
Strand 2	B	1011	1014	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1071	1072	first strand
Strand 2	B	1094	1095	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1124	1126	first strand
Strand 2	B	1153	1155	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1130	1137	first strand
Strand 2	B	1140	1147	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1166	1167	first strand
Strand 2	B	1180	1187	anti-parallel
Strand 3	B	1250	1257	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1260	1261	first strand
Strand 2	B	1272	1273	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1293	1297	first strand
Strand 2	B	1283	1287	anti-parallel
Strand 3	B	1323	1328	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1370	1375	first strand
Strand 2	B	1360	1367	anti-parallel
Strand 3	B	1333	1335	anti-parallel
Strand 4	B	1416	1420	anti-parallel
Strand 5	B	1426	1427	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	76	first strand
Strand 2	G	37	39	parallel
Strand 3	G	6	8	parallel
Strand 4	G	113	115	parallel
Strand 5	G	129	132	parallel
Strand 6	G	124	125	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	76	first strand
Strand 2	H	37	39	parallel
Strand 3	H	6	8	parallel
Strand 4	H	113	115	parallel
Strand 5	H	129	132	parallel
Strand 6	H	124	125	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMM