Analysis of interatomic Contacts of Structural Units in PDB entry:
8WMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WMT entry

There are 2 chains in PDB entry 8WMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8ALA 246
B
 THR 8LEU 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8WMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
27 43Right-handed alpha
Helix 3
AA3
A
47 68Right-handed alpha
Helix 4
AA4
A
75 91Right-handed alpha
Helix 5
AA5
A
98 107Right-handed alpha
Helix 6
AA6
A
108 111Right-handed 310
Helix 7
AA7
A
117 127Right-handed alpha
Helix 8
AA8
A
138 150Right-handed alpha
Helix 9
AA9
A
160 162Right-handed 310
Helix 10
AB1
A
168 180Right-handed alpha
Helix 11
AB2
A
182 184Right-handed 310
Helix 12
AB3
A
192 203Right-handed alpha
Helix 13
AB4
A
235 244Right-handed alpha
Helix 14
AB5
B
9 13Right-handed 310
Helix 15
AB6
B
27 42Right-handed alpha
Helix 16
AB7
B
47 68Right-handed alpha
Helix 17
AB8
B
75 91Right-handed alpha
Helix 18
AB9
B
98 107Right-handed alpha
Helix 19
AC1
B
108 111Right-handed 310
Helix 20
AC2
B
117 127Right-handed alpha
Helix 21
AC3
B
138 150Right-handed alpha
Helix 22
AC4
B
160 162Right-handed 310
Helix 23
AC5
B
168 180Right-handed alpha
Helix 24
AC6
B
182 184Right-handed 310
Helix 25
AC7
B
192 203Right-handed alpha
Helix 26
AC8
B
235 244Right-handed alpha
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There are 4 sheets in PDB entry 8WMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
130 135parallel
Strand 3
A
15 18parallel
Strand 4
A
186 190parallel
Strand 5
A
205 209parallel
Strand 6
A
231 233parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
113 114anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 158first strand
Strand 2
B
130 135parallel
Strand 3
B
15 18parallel
Strand 4
B
186 190parallel
Strand 5
B
205 209parallel
Strand 6
B
231 233parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il