Analysis of interatomic Contacts of Structural Units in PDB entry:
8WND

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WND entry

There are 4 chains in PDB entry 8WND (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	LEU 1072
T	G 1	A 76
B	PHE 8	ASP 1041
R	G 2	A 76

There are 94 helices in PDB entry 8WND. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	25	Right-handed alpha
Helix 2	AA2	A	25	33	Right-handed alpha
Helix 3	AA3	A	54	74	Right-handed alpha
Helix 4	AA4	A	88	100	Right-handed alpha
Helix 5	AA5	A	103	111	Right-handed alpha
Helix 6	AA6	A	111	126	Right-handed alpha
Helix 7	AA7	A	126	137	Right-handed alpha
Helix 8	AA8	A	151	168	Right-handed alpha
Helix 9	AA9	A	189	194	Right-handed alpha
Helix 10	AB1	A	225	232	Right-handed 310
Helix 11	AB2	A	258	265	Right-handed 310
Helix 12	AB3	A	268	272	Right-handed 310
Helix 13	AB4	A	283	285	Right-handed 310
Helix 14	AB5	A	330	340	Right-handed alpha
Helix 15	AB6	A	363	367	Right-handed 310
Helix 16	AB7	A	370	385	Right-handed alpha
Helix 17	AB8	A	420	422	Right-handed 310
Helix 18	AB9	A	423	433	Right-handed alpha
Helix 19	AC1	A	438	444	Right-handed alpha
Helix 20	AC2	A	444	452	Right-handed alpha
Helix 21	AC3	A	484	493	Right-handed alpha
Helix 22	AC4	A	501	506	Right-handed alpha
Helix 23	AC5	A	527	533	Right-handed alpha
Helix 24	AC6	A	534	539	Right-handed alpha
Helix 25	AC7	A	549	554	Right-handed alpha
Helix 26	AC8	A	562	567	Right-handed 310
Helix 27	AC9	A	568	582	Right-handed alpha
Helix 28	AD1	A	612	621	Right-handed alpha
Helix 29	AD2	A	621	631	Right-handed alpha
Helix 30	AD3	A	632	637	Right-handed 310
Helix 31	AD4	A	643	654	Right-handed alpha
Helix 32	AD5	A	654	677	Right-handed alpha
Helix 33	AD6	A	690	712	Right-handed alpha
Helix 34	AD7	A	718	732	Right-handed alpha
Helix 35	AD8	A	733	743	Right-handed alpha
Helix 36	AD9	A	747	769	Right-handed alpha
Helix 37	AE1	A	773	783	Right-handed alpha
Helix 38	AE2	A	784	788	Right-handed 310
Helix 39	AE3	A	789	795	Right-handed alpha
Helix 40	AE4	A	817	841	Right-handed alpha
Helix 41	AE5	A	858	867	Right-handed alpha
Helix 42	AE6	A	868	877	Right-handed alpha
Helix 43	AE7	A	886	891	Right-handed alpha
Helix 44	AE8	A	899	908	Right-handed alpha
Helix 45	AE9	A	910	918	Right-handed alpha
Helix 46	AF1	A	919	921	Right-handed 310
Helix 47	AF2	A	922	933	Right-handed alpha
Helix 48	AF3	A	979	981	Right-handed 310
Helix 49	AF4	A	982	1003	Right-handed alpha
Helix 50	AF5	A	1022	1030	Right-handed alpha
Helix 51	AF6	A	1031	1039	Right-handed alpha
Helix 52	AF7	B	9	25	Right-handed alpha
Helix 53	AF8	B	25	33	Right-handed alpha
Helix 54	AF9	B	54	74	Right-handed alpha
Helix 55	AG1	B	88	100	Right-handed alpha
Helix 56	AG2	B	103	111	Right-handed alpha
Helix 57	AG3	B	111	126	Right-handed alpha
Helix 58	AG4	B	126	137	Right-handed alpha
Helix 59	AG5	B	151	168	Right-handed alpha
Helix 60	AG6	B	189	194	Right-handed alpha
Helix 61	AG7	B	225	232	Right-handed 310
Helix 62	AG8	B	268	272	Right-handed 310
Helix 63	AG9	B	326	329	Right-handed 310
Helix 64	AH1	B	330	340	Right-handed alpha
Helix 65	AH2	B	373	385	Right-handed alpha
Helix 66	AH3	B	420	422	Right-handed 310
Helix 67	AH4	B	423	433	Right-handed alpha
Helix 68	AH5	B	438	444	Right-handed alpha
Helix 69	AH6	B	444	452	Right-handed alpha
Helix 70	AH7	B	484	493	Right-handed alpha
Helix 71	AH8	B	501	506	Right-handed alpha
Helix 72	AH9	B	527	533	Right-handed alpha
Helix 73	AI1	B	534	539	Right-handed alpha
Helix 74	AI2	B	549	554	Right-handed alpha
Helix 75	AI3	B	562	567	Right-handed 310
Helix 76	AI4	B	568	582	Right-handed alpha
Helix 77	AI5	B	612	620	Right-handed alpha
Helix 78	AI6	B	621	631	Right-handed alpha
Helix 79	AI7	B	632	637	Right-handed 310
Helix 80	AI8	B	643	654	Right-handed alpha
Helix 81	AI9	B	654	677	Right-handed alpha
Helix 82	AJ1	B	690	712	Right-handed alpha
Helix 83	AJ2	B	718	732	Right-handed alpha
Helix 84	AJ3	B	733	743	Right-handed alpha
Helix 85	AJ4	B	748	769	Right-handed alpha
Helix 86	AJ5	B	773	785	Right-handed alpha
Helix 87	AJ6	B	789	795	Right-handed alpha
Helix 88	AJ7	B	802	806	Right-handed 310
Helix 89	AJ8	B	817	842	Right-handed alpha
Helix 90	AJ9	B	858	868	Right-handed alpha
Helix 91	AK1	B	868	877	Right-handed alpha
Helix 92	AK2	B	982	1003	Right-handed alpha
Helix 93	AK3	B	1022	1030	Right-handed alpha
Helix 94	AK4	B	1030	1039	Right-handed alpha

There are 21 sheets in PDB entry 8WND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	142	148	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	171	181	anti-parallel
Strand 3	A	409	418	anti-parallel
Strand 4	A	456	457	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	281	first strand
Strand 2	A	242	248	anti-parallel
Strand 3	A	253	257	anti-parallel
Strand 4	A	217	223	parallel
Strand 5	A	197	210	anti-parallel
Strand 6	A	388	399	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	310	first strand
Strand 2	A	234	237	parallel
Strand 3	A	323	325	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	588	590	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	525	526	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	470	472	anti-parallel
Strand 3	A	518	521	anti-parallel
Strand 4	A	509	511	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	596	first strand
Strand 2	A	640	641	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	884	first strand
Strand 2	A	849	855	parallel
Strand 3	A	971	975	anti-parallel
Strand 4	A	962	966	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	893	898	first strand
Strand 2	A	947	952	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	934	937	first strand
Strand 2	A	940	943	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1042	1044	first strand
Strand 2	A	1010	1018	parallel
Strand 3	A	1063	1071	anti-parallel
Strand 4	A	1054	1060	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	142	148	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	171	181	anti-parallel
Strand 3	B	409	418	anti-parallel
Strand 4	B	456	457	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	281	first strand
Strand 2	B	242	248	anti-parallel
Strand 3	B	253	257	anti-parallel
Strand 4	B	218	223	parallel
Strand 5	B	197	210	anti-parallel
Strand 6	B	390	399	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	310	first strand
Strand 2	B	234	237	parallel
Strand 3	B	323	325	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	588	590	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	525	526	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	481	first strand
Strand 2	B	470	472	anti-parallel
Strand 3	B	518	521	anti-parallel
Strand 4	B	509	511	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	596	first strand
Strand 2	B	640	641	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	878	884	first strand
Strand 2	B	849	855	parallel
Strand 3	B	971	975	anti-parallel
Strand 4	B	962	966	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WND

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WND