Analysis of interatomic Contacts of Structural Units in PDB entry:
8WNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WNF entry

There is 1 chain in PDB entry 8WNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ARG 920
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8WNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
20 35Right-handed alpha
Helix 3
AA3
A
36 44Right-handed alpha
Helix 4
AA4
A
65 86Right-handed alpha
Helix 5
AA5
A
99 113Right-handed alpha
Helix 6
AA6
A
119 144Right-handed alpha
Helix 7
AA7
A
159 176Right-handed alpha
Helix 8
AA8
A
197 199Right-handed 310
Helix 9
AA9
A
218 226Right-handed alpha
Helix 10
AB1
A
238 245Right-handed 310
Helix 11
AB2
A
267 276Right-handed alpha
Helix 12
AB3
A
290 292Right-handed 310
Helix 13
AB4
A
330 340Right-handed alpha
Helix 14
AB5
A
356 361Right-handed alpha
Helix 15
AB6
A
365 369Right-handed 310
Helix 16
AB7
A
376 384Right-handed alpha
Helix 17
AB8
A
433 443Right-handed alpha
Helix 18
AB9
A
451 463Right-handed alpha
Helix 19
AC1
A
492 507Right-handed alpha
Helix 20
AC2
A
508 514Right-handed alpha
Helix 21
AC3
A
515 520Right-handed alpha
Helix 22
AC4
A
521 529Right-handed 310
Helix 23
AC5
A
539 546Right-handed alpha
Helix 24
AC6
A
546 552Right-handed alpha
Helix 25
AC7
A
572 575Right-handed 310
Helix 26
AC8
A
576 590Right-handed alpha
Helix 27
AC9
A
620 629Right-handed alpha
Helix 28
AD1
A
629 639Right-handed alpha
Helix 29
AD2
A
649 675Right-handed alpha
Helix 30
AD3
A
678 684Right-handed 310
Helix 31
AD4
A
689 712Right-handed alpha
Helix 32
AD5
A
714 728Right-handed alpha
Helix 33
AD6
A
733 745Right-handed alpha
Helix 34
AD7
A
749 771Right-handed alpha
Helix 35
AD8
A
774 784Right-handed alpha
Helix 36
AD9
A
785 793Right-handed alpha
Helix 37
AE1
A
796 800Right-handed 310
Helix 38
AE2
A
804 809Right-handed alpha
Helix 39
AE3
A
820 840Right-handed alpha
Helix 40
AE4
A
845 847Right-handed 310
Helix 41
AE5
A
859 868Right-handed alpha
Helix 42
AE6
A
910 919Right-handed alpha
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There are 12 sheets in PDB entry 8WNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
88 90parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
155 156parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
179 189anti-parallel
Strand 3
A
409 418anti-parallel
Strand 4
A
466 467anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 288first strand
Strand 2
A
255 259anti-parallel
Strand 3
A
263 266anti-parallel
Strand 4
A
231 236parallel
Strand 5
A
201 217anti-parallel
Strand 6
A
296 298anti-parallel
Strand 7
A
305 311anti-parallel
Strand 8
A
247 251parallel
Strand 9
A
322 325anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 288first strand
Strand 2
A
255 259anti-parallel
Strand 3
A
263 266anti-parallel
Strand 4
A
231 236parallel
Strand 5
A
201 217anti-parallel
Strand 6
A
388 401anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
431 432anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
596 600parallel
Strand 3
A
567 570parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
537 538anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 483first strand
Strand 2
A
531 533anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 604first strand
Strand 2
A
646 647parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
871 872first strand
Strand 2
A
849 853parallel
Strand 3
A
885 889anti-parallel
Strand 4
A
878 881anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
893 894first strand
Strand 2
A
901 903anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il