Analysis of interatomic Contacts of Structural Units in PDB entry:
8WNP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WNP entry

There are 8 chains in PDB entry 8WNP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	CYS 215
B	SER 1	THR 224
C	SER 1	CYS 215
D	SER 1	THR 224
E	ASP 1	ALA 352
F	ASP 1	ALA 352
G	VAL 1	SER 120
H	VAL 1	SER 120

There are 29 helices in PDB entry 8WNP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	122	128	Right-handed 310
Helix 2	AA2	A	184	188	Right-handed alpha
Helix 3	AA3	B	159	161	Right-handed 310
Helix 4	AA4	B	190	192	Right-handed 310
Helix 5	AA5	B	204	207	Right-handed 310
Helix 6	AA6	C	122	128	Right-handed 310
Helix 7	AA7	C	184	188	Right-handed alpha
Helix 8	AA8	D	29	33	Right-handed 310
Helix 9	AA9	D	62	65	Right-handed 310
Helix 10	AB1	D	130	134	Right-handed 310
Helix 11	AB2	D	159	161	Right-handed 310
Helix 12	AB3	D	190	194	Right-handed 310
Helix 13	AB4	D	204	207	Right-handed 310
Helix 14	AB5	E	38	51	Right-handed alpha
Helix 15	AB6	E	61	82	Right-handed alpha
Helix 16	AB7	E	144	146	Right-handed 310
Helix 17	AB8	E	237	241	Right-handed 310
Helix 18	AB9	E	244	248	Right-handed 310
Helix 19	AC1	F	38	52	Right-handed alpha
Helix 20	AC2	F	61	71	Right-handed alpha
Helix 21	AC3	F	71	80	Right-handed alpha
Helix 22	AC4	F	144	148	Right-handed 310
Helix 23	AC5	F	226	230	Right-handed 310
Helix 24	AC6	F	237	241	Right-handed 310
Helix 25	AC7	F	244	248	Right-handed 310
Helix 26	AC8	G	27	31	Right-handed 310
Helix 27	AC9	G	73	75	Right-handed 310
Helix 28	AD1	G	86	90	Right-handed 310
Helix 29	AD2	H	86	90	Right-handed 310

There are 37 sheets in PDB entry 8WNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	63	68	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	104	106	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	46	50	anti-parallel
Strand 3	A	35	39	anti-parallel
Strand 4	A	86	90	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	130	140	anti-parallel
Strand 3	A	174	183	anti-parallel
Strand 4	A	160	164	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	146	151	anti-parallel
Strand 3	A	192	198	anti-parallel
Strand 4	A	206	211	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	110	114	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	34	40	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	78	84	anti-parallel
Strand 3	B	68	73	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	127	first strand
Strand 2	B	138	146	anti-parallel
Strand 3	B	179	188	anti-parallel
Strand 4	B	166	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	138	146	anti-parallel
Strand 3	B	179	188	anti-parallel
Strand 4	B	172	173	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	157	first strand
Strand 2	B	197	203	anti-parallel
Strand 3	B	208	214	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	20	24	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	63	68	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	104	106	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	47	50	anti-parallel
Strand 3	C	35	39	anti-parallel
Strand 4	C	86	90	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	130	140	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	160	164	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	146	151	anti-parallel
Strand 3	C	192	198	anti-parallel
Strand 4	C	206	211	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	18	26	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	110	114	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	110	114	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	103	105	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	127	first strand
Strand 2	D	138	148	anti-parallel
Strand 3	D	179	188	anti-parallel
Strand 4	D	166	168	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	127	first strand
Strand 2	D	138	148	anti-parallel
Strand 3	D	179	188	anti-parallel
Strand 4	D	172	173	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	208	213	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	F	20	22	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	165	171	parallel
Strand 3	E	153	157	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	57	first strand
Strand 2	E	148	149	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	90	first strand
Strand 2	E	132	135	parallel

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There are 14 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	331	first strand
Strand 2	E	322	325	anti-parallel
Strand 3	E	273	276	anti-parallel
Strand 4	E	210	217	anti-parallel
Strand 5	E	200	206	anti-parallel
Strand 6	E	192	196	anti-parallel
Strand 7	E	185	189	anti-parallel
Strand 8	F	185	189	anti-parallel
Strand 9	F	192	196	anti-parallel
Strand 10	F	200	205	anti-parallel
Strand 11	F	211	217	anti-parallel
Strand 12	F	273	277	anti-parallel
Strand 13	F	321	325	anti-parallel
Strand 14	F	328	331	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	312	first strand
Strand 2	E	336	337	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	13	17	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	36	first strand
Strand 2	F	166	171	parallel
Strand 3	F	153	157	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	90	first strand
Strand 2	F	133	135	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	285	first strand
Strand 2	F	310	312	parallel
Strand 3	F	336	337	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	6	first strand
Strand 2	G	16	24	anti-parallel
Strand 3	G	77	83	anti-parallel
Strand 4	G	68	72	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	114	118	parallel
Strand 3	G	91	98	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	45	50	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	114	118	parallel
Strand 3	G	91	98	anti-parallel
Strand 4	G	107	110	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	16	22	anti-parallel
Strand 3	H	77	83	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	11	first strand
Strand 2	H	116	118	parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	50	anti-parallel
Strand 3	H	33	38	anti-parallel
Strand 4	H	92	97	anti-parallel
Strand 5	H	109	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WNP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WNP