Analysis of interatomic Contacts of Structural Units in PDB entry:
8WNS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WNS entry

There are 2 chains in PDB entry 8WNS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 163ALA 630
B
 LEU 42GLN 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8WNS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 175Right-handed alpha
Helix 2
AA2
A
178 207Right-handed alpha
Helix 3
AA3
A
218 222Right-handed 310
Helix 4
AA4
A
230 236Right-handed alpha
Helix 5
AA5
A
241 246Right-handed alpha
Helix 6
AA6
A
248 256Right-handed alpha
Helix 7
AA7
A
283 286Right-handed 310
Helix 8
AA8
A
287 301Right-handed alpha
Helix 9
AA9
A
324 342Right-handed alpha
Helix 10
AB1
A
356 372Right-handed alpha
Helix 11
AB2
A
385 394Right-handed alpha
Helix 12
AB3
A
405 407Right-handed 310
Helix 13
AB4
A
412 428Right-handed alpha
Helix 14
AB5
A
441 445Right-handed 310
Helix 15
AB6
A
447 449Right-handed 310
Helix 16
AB7
A
450 461Right-handed alpha
Helix 17
AB8
A
519 534Right-handed alpha
Helix 18
AB9
A
534 540Right-handed alpha
Helix 19
AC1
A
585 589Right-handed 310
Helix 20
AC2
B
43 54Right-handed alpha
Helix 21
AC3
B
60 70Right-handed alpha
Helix 22
AC4
B
71 100Right-handed alpha
Helix 23
AC5
B
105 114Right-handed alpha
Helix 24
AC6
B
115 129Right-handed alpha
Helix 25
AC7
B
129 148Right-handed alpha
Helix 26
AC8
B
157 179Right-handed alpha
Helix 27
AC9
B
180 212Right-handed alpha
Helix 28
AD1
B
218 223Right-handed alpha
Helix 29
AD2
B
230 242Right-handed alpha
Helix 30
AD3
B
247 255Right-handed 310
Helix 31
AD4
B
260 291Right-handed alpha
Helix 32
AD5
B
292 298Right-handed alpha
Helix 33
AD6
B
301 311Right-handed alpha
Helix 34
AD7
B
312 315Right-handed 310
Helix 35
AD8
B
316 348Right-handed alpha
Helix 36
AD9
B
351 355Right-handed 310
Helix 37
AE1
B
364 380Right-handed alpha
Helix 38
AE2
B
383 413Right-handed alpha
Helix 39
AE3
B
424 445Right-handed alpha
Helix 40
AE4
B
445 458Right-handed alpha
Helix 41
AE5
B
458 467Right-handed alpha
Helix 42
AE6
B
473 492Right-handed alpha
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There are 6 sheets in PDB entry 8WNS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 403first strand
Strand 2
A
376 381parallel
Strand 3
A
345 349parallel
Strand 4
A
304 308parallel
Strand 5
A
259 262parallel
Strand 6
A
225 227parallel
Strand 7
A
466 467parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
277 281anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
551 557anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
622 627anti-parallel
Strand 5
A
598 599anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
616 617anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 594first strand
Strand 2
A
610 611anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
493 494anti-parallel
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