Analysis of interatomic Contacts of Structural Units in PDB entry:
8WNU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WNU entry

There are 8 chains in PDB entry 8WNU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	CYS 215
B	SER 1	THR 225
C	SER 1	CYS 215
D	SER 1	THR 225
E	ASP 1	ALA 352
F	ASP 1	ALA 352
G	VAL 1	SER 120
H	VAL 1	SER 120

There are 33 helices in PDB entry 8WNU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	84	Right-handed 310
Helix 2	AA2	A	122	127	Right-handed alpha
Helix 3	AA3	A	184	188	Right-handed alpha
Helix 4	AA4	B	29	33	Right-handed 310
Helix 5	AA5	B	87	91	Right-handed 310
Helix 6	AA6	B	160	162	Right-handed 310
Helix 7	AA7	B	189	193	Right-handed 310
Helix 8	AA8	B	206	208	Right-handed 310
Helix 9	AA9	C	80	84	Right-handed 310
Helix 10	AB1	C	123	128	Right-handed alpha
Helix 11	AB2	C	151	154	Right-handed 310
Helix 12	AB3	C	184	188	Right-handed alpha
Helix 13	AB4	D	87	91	Right-handed 310
Helix 14	AB5	D	160	162	Right-handed 310
Helix 15	AB6	D	189	193	Right-handed 310
Helix 16	AB7	D	205	208	Right-handed 310
Helix 17	AB8	E	24	32	Right-handed 310
Helix 18	AB9	E	38	52	Right-handed alpha
Helix 19	AC1	E	61	72	Right-handed alpha
Helix 20	AC2	E	73	82	Right-handed alpha
Helix 21	AC3	E	119	124	Right-handed 310
Helix 22	AC4	E	144	146	Right-handed 310
Helix 23	AC5	E	180	183	Right-handed 310
Helix 24	AC6	E	226	230	Right-handed 310
Helix 25	AC7	E	341	345	Right-handed 310
Helix 26	AC8	F	38	53	Right-handed alpha
Helix 27	AC9	F	63	72	Right-handed alpha
Helix 28	AD1	F	72	83	Right-handed alpha
Helix 29	AD2	F	144	146	Right-handed 310
Helix 30	AD3	F	244	248	Right-handed 310
Helix 31	AD4	G	27	31	Right-handed 310
Helix 32	AD5	G	86	90	Right-handed 310
Helix 33	AD6	H	86	90	Right-handed 310

There are 31 sheets in PDB entry 8WNU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	20	26	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	63	68	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	103	107	parallel
Strand 3	A	86	90	anti-parallel
Strand 4	A	35	39	anti-parallel
Strand 5	A	46	50	anti-parallel
Strand 6	A	54	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	130	140	anti-parallel
Strand 3	A	174	183	anti-parallel
Strand 4	A	161	164	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	146	151	anti-parallel
Strand 3	A	195	198	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	111	115	parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	35	40	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	126	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	180	185	anti-parallel
Strand 4	B	168	174	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	158	first strand
Strand 2	B	198	204	anti-parallel
Strand 3	B	209	215	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	20	26	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	63	68	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	103	107	parallel
Strand 3	C	86	90	anti-parallel
Strand 4	C	35	39	anti-parallel
Strand 5	C	46	50	anti-parallel
Strand 6	C	54	55	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	140	first strand
Strand 2	C	174	183	anti-parallel
Strand 3	C	160	164	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	195	196	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	111	115	parallel
Strand 3	D	92	97	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	126	first strand
Strand 2	D	144	149	anti-parallel
Strand 3	D	180	185	anti-parallel
Strand 4	D	168	169	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	126	first strand
Strand 2	D	144	149	anti-parallel
Strand 3	D	180	185	anti-parallel
Strand 4	D	173	174	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	158	first strand
Strand 2	D	198	204	anti-parallel
Strand 3	D	209	215	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	7	first strand
Strand 2	E	12	13	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	22	first strand
Strand 2	F	13	20	anti-parallel
Strand 3	F	2	6	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	36	first strand
Strand 2	E	168	171	parallel
Strand 3	E	153	155	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	132	135	parallel
Strand 3	E	56	57	parallel
Strand 4	E	148	149	parallel

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There are 14 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	331	first strand
Strand 2	E	322	325	anti-parallel
Strand 3	E	273	276	anti-parallel
Strand 4	E	211	217	anti-parallel
Strand 5	E	200	205	anti-parallel
Strand 6	E	192	197	anti-parallel
Strand 7	E	185	189	anti-parallel
Strand 8	F	185	189	anti-parallel
Strand 9	F	192	196	anti-parallel
Strand 10	F	200	205	anti-parallel
Strand 11	F	211	217	anti-parallel
Strand 12	F	273	277	anti-parallel
Strand 13	F	321	325	anti-parallel
Strand 14	F	328	331	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	168	170	parallel
Strand 3	F	154	157	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	57	first strand
Strand 2	F	148	149	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	90	first strand
Strand 2	F	132	135	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	284	287	first strand
Strand 2	F	310	313	parallel
Strand 3	F	336	337	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	17	23	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	68	71	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	114	118	parallel
Strand 3	G	91	97	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	44	50	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	6	first strand
Strand 2	H	17	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	117	118	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	44	50	anti-parallel
Strand 3	H	33	38	anti-parallel
Strand 4	H	92	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WNU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WNU