Analysis of interatomic Contacts of Structural Units in PDB entry:
8WNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WNY entry

There are 2 chains in PDB entry 8WNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 163ALA 630
B
 LEU 42GLN 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8WNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 175Right-handed alpha
Helix 2
AA2
A
178 207Right-handed alpha
Helix 3
AA3
A
230 236Right-handed alpha
Helix 4
AA4
A
241 247Right-handed alpha
Helix 5
AA5
A
248 255Right-handed alpha
Helix 6
AA6
A
287 301Right-handed alpha
Helix 7
AA7
A
324 342Right-handed alpha
Helix 8
AA8
A
350 354Right-handed 310
Helix 9
AA9
A
356 372Right-handed alpha
Helix 10
AB1
A
385 394Right-handed alpha
Helix 11
AB2
A
412 428Right-handed alpha
Helix 12
AB3
A
441 445Right-handed 310
Helix 13
AB4
A
450 460Right-handed alpha
Helix 14
AB5
A
519 534Right-handed alpha
Helix 15
AB6
A
534 540Right-handed alpha
Helix 16
AB7
A
585 589Right-handed 310
Helix 17
AB8
B
43 54Right-handed alpha
Helix 18
AB9
B
56 59Right-handed 310
Helix 19
AC1
B
60 70Right-handed alpha
Helix 20
AC2
B
71 100Right-handed alpha
Helix 21
AC3
B
105 114Right-handed alpha
Helix 22
AC4
B
115 129Right-handed alpha
Helix 23
AC5
B
129 148Right-handed alpha
Helix 24
AC6
B
157 179Right-handed alpha
Helix 25
AC7
B
180 211Right-handed alpha
Helix 26
AC8
B
218 223Right-handed alpha
Helix 27
AC9
B
230 242Right-handed alpha
Helix 28
AD1
B
243 246Right-handed 310
Helix 29
AD2
B
247 258Right-handed 310
Helix 30
AD3
B
260 291Right-handed alpha
Helix 31
AD4
B
292 298Right-handed alpha
Helix 32
AD5
B
301 311Right-handed alpha
Helix 33
AD6
B
312 315Right-handed 310
Helix 34
AD7
B
316 347Right-handed alpha
Helix 35
AD8
B
351 356Right-handed 310
Helix 36
AD9
B
364 380Right-handed alpha
Helix 37
AE1
B
383 413Right-handed alpha
Helix 38
AE2
B
424 445Right-handed alpha
Helix 39
AE3
B
445 458Right-handed alpha
Helix 40
AE4
B
458 467Right-handed alpha
Helix 41
AE5
B
473 492Right-handed alpha
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There are 5 sheets in PDB entry 8WNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 403first strand
Strand 2
A
376 381parallel
Strand 3
A
345 348parallel
Strand 4
A
304 308parallel
Strand 5
A
259 262parallel
Strand 6
A
225 228parallel
Strand 7
A
464 468parallel
Strand 8
A
433 434parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
277 281anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
551 557anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
622 627anti-parallel
Strand 5
A
593 599anti-parallel
Strand 6
A
609 611anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
616 617anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
493 494anti-parallel
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