Analysis of interatomic Contacts of Structural Units in PDB entry:
8WOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WOI entry

There is 1 chain in PDB entry 8WOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21ARG 1251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 8WOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 53Right-handed alpha
Helix 2
AA2
A
54 67Right-handed alpha
Helix 3
AA3
A
77 85Right-handed alpha
Helix 4
AA4
A
88 99Right-handed alpha
Helix 5
AA5
A
112 117Right-handed alpha
Helix 6
AA6
A
119 127Right-handed alpha
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
143 148Right-handed alpha
Helix 9
AA9
A
150 160Right-handed alpha
Helix 10
AB1
A
163 176Right-handed alpha
Helix 11
AB2
A
178 184Right-handed alpha
Helix 12
AB3
A
186 191Right-handed alpha
Helix 13
AB4
A
194 200Right-handed alpha
Helix 14
AB5
A
204 221Right-handed alpha
Helix 15
AB6
A
225 233Right-handed alpha
Helix 16
AB7
A
233 240Right-handed alpha
Helix 17
AB8
A
254 263Right-handed alpha
Helix 18
AB9
A
265 273Right-handed alpha
Helix 19
AC1
A
278 281Right-handed 310
Helix 20
AC2
A
282 287Right-handed alpha
Helix 21
AC3
A
289 294Right-handed alpha
Helix 22
AC4
A
302 311Right-handed alpha
Helix 23
AC5
A
312 317Right-handed alpha
Helix 24
AC6
A
321 325Right-handed 310
Helix 25
AC7
A
326 342Right-handed alpha
Helix 26
AC8
A
430 434Right-handed 310
Helix 27
AC9
A
460 464Right-handed 310
Helix 28
AD1
A
470 479Right-handed alpha
Helix 29
AD2
A
512 520Right-handed alpha
Helix 30
AD3
A
536 547Right-handed alpha
Helix 31
AD4
A
561 565Right-handed 310
Helix 32
AD5
A
595 605Right-handed alpha
Helix 33
AD6
A
621 631Right-handed alpha
Helix 34
AD7
A
661 666Right-handed alpha
Helix 35
AD8
A
671 680Right-handed alpha
Helix 36
AD9
A
690 695Right-handed alpha
Helix 37
AE1
A
699 708Right-handed alpha
Helix 38
AE2
A
710 715Right-handed alpha
Helix 39
AE3
A
731 737Right-handed alpha
Helix 40
AE4
A
739 744Right-handed alpha
Helix 41
AE5
A
745 751Right-handed alpha
Helix 42
AE6
A
759 772Right-handed alpha
Helix 43
AE7
A
773 774Right-handed 310
Helix 44
AE8
A
775 779Right-handed 310
Helix 45
AE9
A
800 805Right-handed alpha
Helix 46
AF1
A
808 821Right-handed alpha
Helix 47
AF2
A
824 829Right-handed alpha
Helix 48
AF3
A
831 853Right-handed alpha
Helix 49
AF4
A
860 865Right-handed alpha
Helix 50
AF5
A
866 873Right-handed alpha
Helix 51
AF6
A
878 884Right-handed alpha
Helix 52
AF7
A
887 892Right-handed alpha
Helix 53
AF8
A
892 897Right-handed alpha
Helix 54
AF9
A
899 921Right-handed alpha
Helix 55
AG1
A
921 926Right-handed alpha
Helix 56
AG2
A
927 939Right-handed alpha
Helix 57
AG3
A
948 967Right-handed alpha
Helix 58
AG4
A
969 975Right-handed alpha
Helix 59
AG5
A
1077 1079Right-handed 310
Helix 60
AG6
A
1084 1088Right-handed 310
Helix 61
AG7
A
1118 1123Right-handed alpha
Helix 62
AG8
A
1127 1133Right-handed alpha
Helix 63
AG9
A
1150 1165Right-handed alpha
Helix 64
AH1
A
1187 1194Right-handed alpha
Helix 65
AH2
A
1240 1247Right-handed alpha
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There are 7 sheets in PDB entry 8WOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
365 371anti-parallel
Strand 3
A
421 426anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
398 399parallel
Strand 3
A
572 574parallel
Strand 4
A
579 581anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 445first strand
Strand 2
A
524 526parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 647first strand
Strand 2
A
655 657anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1028 1034first strand
Strand 2
A
1011 1017anti-parallel
Strand 3
A
1069 1071anti-parallel
Strand 4
A
1074 1075anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1169 1171first strand
Strand 2
A
1199 1201parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1217 1220first strand
Strand 2
A
1223 1227anti-parallel
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