Analysis of interatomic Contacts of Structural Units in PDB entry:
8WOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WOK entry

There are 2 chains in PDB entry 8WOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1ASP 277
B
 LEU 1ASP 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8WOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
34 39Right-handed alpha
Helix 3
AA3
A
105 112Right-handed alpha
Helix 4
AA4
B
6 11Right-handed alpha
Helix 5
AA5
B
34 39Right-handed alpha
Helix 6
AA6
B
105 112Right-handed alpha
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There are 6 sheets in PDB entry 8WOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
16 20anti-parallel
Strand 3
A
75 80anti-parallel
Strand 4
A
247 254anti-parallel
Strand 5
A
139 146anti-parallel
Strand 6
A
153 158anti-parallel
Strand 7
A
167 172anti-parallel
Strand 8
A
180 185anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
264 275anti-parallel
Strand 4
A
117 127anti-parallel
Strand 5
A
204 212anti-parallel
Strand 6
A
215 221anti-parallel
Strand 7
A
228 233anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
114 115parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
16 20anti-parallel
Strand 3
B
75 80anti-parallel
Strand 4
B
247 254anti-parallel
Strand 5
B
139 146anti-parallel
Strand 6
B
153 158anti-parallel
Strand 7
B
167 172anti-parallel
Strand 8
B
180 185anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
56 61anti-parallel
Strand 3
B
264 275anti-parallel
Strand 4
B
117 127anti-parallel
Strand 5
B
204 212anti-parallel
Strand 6
B
215 221anti-parallel
Strand 7
B
228 233anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
114 115parallel
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