Analysis of interatomic Contacts of Structural Units in PDB entry:
8WOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WOM entry

There is 1 chain in PDB entry 8WOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21ARG 1251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8WOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 45Right-handed alpha
Helix 2
AA2
A
46 51Right-handed alpha
Helix 3
AA3
A
54 71Right-handed alpha
Helix 4
AA4
A
77 98Right-handed alpha
Helix 5
AA5
A
119 124Right-handed alpha
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
143 150Right-handed alpha
Helix 8
AA8
A
150 160Right-handed alpha
Helix 9
AA9
A
163 176Right-handed alpha
Helix 10
AB1
A
178 184Right-handed alpha
Helix 11
AB2
A
194 209Right-handed alpha
Helix 12
AB3
A
209 221Right-handed alpha
Helix 13
AB4
A
225 233Right-handed alpha
Helix 14
AB5
A
233 240Right-handed alpha
Helix 15
AB6
A
254 263Right-handed alpha
Helix 16
AB7
A
265 270Right-handed alpha
Helix 17
AB8
A
275 280Right-handed alpha
Helix 18
AB9
A
282 287Right-handed alpha
Helix 19
AC1
A
289 294Right-handed alpha
Helix 20
AC2
A
303 314Right-handed alpha
Helix 21
AC3
A
315 319Right-handed 310
Helix 22
AC4
A
320 324Right-handed 310
Helix 23
AC5
A
326 339Right-handed alpha
Helix 24
AC6
A
409 414Right-handed alpha
Helix 25
AC7
A
432 434Right-handed 310
Helix 26
AC8
A
439 441Right-handed 310
Helix 27
AC9
A
460 464Right-handed 310
Helix 28
AD1
A
470 477Right-handed alpha
Helix 29
AD2
A
511 520Right-handed alpha
Helix 30
AD3
A
537 550Right-handed alpha
Helix 31
AD4
A
595 605Right-handed alpha
Helix 32
AD5
A
621 632Right-handed alpha
Helix 33
AD6
A
671 679Right-handed alpha
Helix 34
AD7
A
697 700Right-handed 310
Helix 35
AD8
A
701 715Right-handed alpha
Helix 36
AD9
A
723 728Right-handed alpha
Helix 37
AE1
A
728 737Right-handed alpha
Helix 38
AE2
A
745 751Right-handed alpha
Helix 39
AE3
A
761 772Right-handed alpha
Helix 40
AE4
A
775 780Right-handed alpha
Helix 41
AE5
A
781 785Right-handed 310
Helix 42
AE6
A
800 805Right-handed alpha
Helix 43
AE7
A
808 813Right-handed alpha
Helix 44
AE8
A
813 818Right-handed alpha
Helix 45
AE9
A
820 829Right-handed alpha
Helix 46
AF1
A
834 853Right-handed alpha
Helix 47
AF2
A
854 856Right-handed 310
Helix 48
AF3
A
860 865Right-handed alpha
Helix 49
AF4
A
866 875Right-handed alpha
Helix 50
AF5
A
878 883Right-handed alpha
Helix 51
AF6
A
884 887Right-handed 310
Helix 52
AF7
A
891 895Right-handed 310
Helix 53
AF8
A
900 905Right-handed alpha
Helix 54
AF9
A
908 921Right-handed alpha
Helix 55
AG1
A
921 926Right-handed alpha
Helix 56
AG2
A
927 939Right-handed alpha
Helix 57
AG3
A
949 959Right-handed alpha
Helix 58
AG4
A
959 964Right-handed alpha
Helix 59
AG5
A
970 975Right-handed alpha
Helix 60
AG6
A
1054 1059Right-handed alpha
Helix 61
AG7
A
1077 1079Right-handed 310
Helix 62
AG8
A
1080 1086Right-handed alpha
Helix 63
AG9
A
1115 1123Right-handed alpha
Helix 64
AH1
A
1127 1133Right-handed alpha
Helix 65
AH2
A
1150 1166Right-handed alpha
Helix 66
AH3
A
1189 1194Right-handed alpha
Helix 67
AH4
A
1240 1246Right-handed alpha
Helix 68
AH5
A
1247 1249Right-handed 310
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There are 6 sheets in PDB entry 8WOM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 371first strand
Strand 2
A
421 426anti-parallel
Strand 3
A
429 430anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 446first strand
Strand 2
A
524 527parallel
Strand 3
A
554 556parallel
Strand 4
A
395 399parallel
Strand 5
A
571 574parallel
Strand 6
A
579 581anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 646first strand
Strand 2
A
656 657anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1028 1034first strand
Strand 2
A
1011 1017anti-parallel
Strand 3
A
1069 1071anti-parallel
Strand 4
A
1074 1075anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1041first strand
Strand 2
A
1199 1201parallel
Strand 3
A
1169 1171parallel
Strand 4
A
1088 1090parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1216 1220first strand
Strand 2
A
1223 1228anti-parallel
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