Analysis of interatomic Contacts of Structural Units in PDB entry:
8WOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WOO entry

There is 1 chain in PDB entry 8WOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 21ARG 1251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 8WOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 51Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
75 82Right-handed alpha
Helix 4
AA4
A
88 93Right-handed alpha
Helix 5
AA5
A
93 98Right-handed alpha
Helix 6
AA6
A
115 129Right-handed alpha
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
143 150Right-handed alpha
Helix 9
AA9
A
155 160Right-handed alpha
Helix 10
AB1
A
161 177Right-handed alpha
Helix 11
AB2
A
178 184Right-handed alpha
Helix 12
AB3
A
189 194Right-handed alpha
Helix 13
AB4
A
195 221Right-handed alpha
Helix 14
AB5
A
225 230Right-handed alpha
Helix 15
AB6
A
233 240Right-handed alpha
Helix 16
AB7
A
247 252Right-handed alpha
Helix 17
AB8
A
254 274Right-handed alpha
Helix 18
AB9
A
275 280Right-handed alpha
Helix 19
AC1
A
282 289Right-handed alpha
Helix 20
AC2
A
289 294Right-handed alpha
Helix 21
AC3
A
302 316Right-handed alpha
Helix 22
AC4
A
324 342Right-handed alpha
Helix 23
AC5
A
409 414Right-handed alpha
Helix 24
AC6
A
432 434Right-handed 310
Helix 25
AC7
A
439 441Right-handed 310
Helix 26
AC8
A
460 464Right-handed 310
Helix 27
AC9
A
470 479Right-handed alpha
Helix 28
AD1
A
512 520Right-handed alpha
Helix 29
AD2
A
536 548Right-handed alpha
Helix 30
AD3
A
595 604Right-handed alpha
Helix 31
AD4
A
622 632Right-handed alpha
Helix 32
AD5
A
671 680Right-handed alpha
Helix 33
AD6
A
681 683Right-handed 310
Helix 34
AD7
A
684 696Right-handed alpha
Helix 35
AD8
A
699 709Right-handed alpha
Helix 36
AD9
A
710 715Right-handed alpha
Helix 37
AE1
A
741 751Right-handed alpha
Helix 38
AE2
A
761 772Right-handed alpha
Helix 39
AE3
A
775 779Right-handed 310
Helix 40
AE4
A
781 785Right-handed 310
Helix 41
AE5
A
800 805Right-handed alpha
Helix 42
AE6
A
824 829Right-handed alpha
Helix 43
AE7
A
834 850Right-handed alpha
Helix 44
AE8
A
860 865Right-handed alpha
Helix 45
AE9
A
866 872Right-handed alpha
Helix 46
AF1
A
878 884Right-handed alpha
Helix 47
AF2
A
891 895Right-handed 310
Helix 48
AF3
A
900 905Right-handed alpha
Helix 49
AF4
A
907 919Right-handed alpha
Helix 50
AF5
A
921 926Right-handed alpha
Helix 51
AF6
A
930 939Right-handed alpha
Helix 52
AF7
A
940 942Right-handed 310
Helix 53
AF8
A
949 954Right-handed alpha
Helix 54
AF9
A
954 964Right-handed alpha
Helix 55
AG1
A
965 968Right-handed 310
Helix 56
AG2
A
969 975Right-handed alpha
Helix 57
AG3
A
1050 1058Right-handed 310
Helix 58
AG4
A
1077 1079Right-handed 310
Helix 59
AG5
A
1080 1085Right-handed alpha
Helix 60
AG6
A
1086 1088Right-handed 310
Helix 61
AG7
A
1115 1123Right-handed alpha
Helix 62
AG8
A
1127 1133Right-handed alpha
Helix 63
AG9
A
1150 1166Right-handed alpha
Helix 64
AH1
A
1241 1247Right-handed alpha
Helix 65
AH2
A
1248 1250Right-handed 310
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There are 6 sheets in PDB entry 8WOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
424 426anti-parallel
Strand 3
A
429 430anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 445first strand
Strand 2
A
524 526parallel
Strand 3
A
554 559parallel
Strand 4
A
395 399parallel
Strand 5
A
572 574parallel
Strand 6
A
579 581anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 647first strand
Strand 2
A
655 657anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1011 1012first strand
Strand 2
A
1069 1071anti-parallel
Strand 3
A
1074 1075anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1043first strand
Strand 2
A
1199 1203parallel
Strand 3
A
1169 1171parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1217 1220first strand
Strand 2
A
1223 1227anti-parallel
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