Analysis of interatomic Contacts of Structural Units in PDB entry:
8WOR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WOR entry

There are 2 chains in PDB entry 8WOR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 35	PRO 830
B	PRO 35	PRO 830

There are 36 helices in PDB entry 8WOR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	43	Right-handed alpha
Helix 2	AA2	A	251	253	Right-handed 310
Helix 3	AA3	A	302	335	Right-handed alpha
Helix 4	AA4	A	441	474	Right-handed alpha
Helix 5	AA5	A	482	486	Right-handed 310
Helix 6	AA6	A	495	500	Right-handed alpha
Helix 7	AA7	A	501	527	Right-handed alpha
Helix 8	AA8	A	541	563	Right-handed alpha
Helix 9	AA9	A	570	594	Right-handed alpha
Helix 10	AB1	A	602	621	Right-handed alpha
Helix 11	AB2	A	626	650	Right-handed alpha
Helix 12	AB3	A	686	709	Right-handed alpha
Helix 13	AB4	A	713	738	Right-handed alpha
Helix 14	AB5	A	745	767	Right-handed alpha
Helix 15	AB6	A	776	782	Right-handed alpha
Helix 16	AB7	A	788	792	Right-handed 310
Helix 17	AB8	A	794	816	Right-handed alpha
Helix 18	AB9	A	819	824	Right-handed 310
Helix 19	AC1	B	38	43	Right-handed alpha
Helix 20	AC2	B	251	253	Right-handed 310
Helix 21	AC3	B	302	335	Right-handed alpha
Helix 22	AC4	B	441	474	Right-handed alpha
Helix 23	AC5	B	482	486	Right-handed 310
Helix 24	AC6	B	495	500	Right-handed alpha
Helix 25	AC7	B	501	527	Right-handed alpha
Helix 26	AC8	B	541	563	Right-handed alpha
Helix 27	AC9	B	570	594	Right-handed alpha
Helix 28	AD1	B	602	621	Right-handed alpha
Helix 29	AD2	B	624	650	Right-handed alpha
Helix 30	AD3	B	686	709	Right-handed alpha
Helix 31	AD4	B	713	738	Right-handed alpha
Helix 32	AD5	B	745	767	Right-handed alpha
Helix 33	AD6	B	776	782	Right-handed alpha
Helix 34	AD7	B	788	792	Right-handed 310
Helix 35	AD8	B	794	816	Right-handed alpha
Helix 36	AD9	B	819	824	Right-handed 310

There are 10 sheets in PDB entry 8WOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	62	70	parallel
Strand 3	A	141	150	anti-parallel
Strand 4	A	93	98	anti-parallel
Strand 5	A	103	108	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	56	first strand
Strand 2	A	157	165	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	124	129	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	119	122	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	291	299	anti-parallel
Strand 3	A	199	205	anti-parallel
Strand 4	A	243	249	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	257	264	anti-parallel
Strand 3	A	213	218	anti-parallel
Strand 4	A	236	240	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	61	70	parallel
Strand 3	B	141	151	anti-parallel
Strand 4	B	93	98	anti-parallel
Strand 5	B	103	108	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	56	first strand
Strand 2	B	157	165	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	124	129	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	113	first strand
Strand 2	B	119	122	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	181	first strand
Strand 2	B	291	299	anti-parallel
Strand 3	B	199	205	anti-parallel
Strand 4	B	243	249	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	257	264	anti-parallel
Strand 3	B	213	218	anti-parallel
Strand 4	B	236	240	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WOR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WOR