Analysis of interatomic Contacts of Structural Units in PDB entry:
8WP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WP1 entry

There are 4 chains in PDB entry 8WP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9HIS 312
C
 CYS 3PHE 354
D
 GLU 3ASN 340
E
 SER 8GLU 63
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8WP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
24 50Right-handed alpha
Helix 3
AA3
A
56 75Right-handed alpha
Helix 4
AA4
A
76 82Right-handed alpha
Helix 5
AA5
A
91 121Right-handed alpha
Helix 6
AA6
A
131 134Right-handed 310
Helix 7
AA7
A
135 155Right-handed alpha
Helix 8
AA8
A
157 162Right-handed alpha
Helix 9
AA9
A
174 178Right-handed 310
Helix 10
AB1
A
180 196Right-handed alpha
Helix 11
AB2
A
196 219Right-handed alpha
Helix 12
AB3
A
228 259Right-handed alpha
Helix 13
AB4
A
271 285Right-handed alpha
Helix 14
AB5
A
285 297Right-handed alpha
Helix 15
AB6
A
299 311Right-handed alpha
Helix 16
AB7
C
6 31Right-handed alpha
Helix 17
AB8
C
47 53Right-handed alpha
Helix 18
AB9
C
207 216Right-handed 310
Helix 19
AC1
C
241 255Right-handed alpha
Helix 20
AC2
C
273 279Right-handed alpha
Helix 21
AC3
C
282 286Right-handed 310
Helix 22
AC4
C
295 309Right-handed alpha
Helix 23
AC5
C
330 351Right-handed alpha
Helix 24
AC6
D
4 24Right-handed alpha
Helix 25
AC7
D
32 36Right-handed 310
Helix 26
AC8
E
10 23Right-handed alpha
Helix 27
AC9
E
33 44Right-handed alpha
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There are 9 sheets in PDB entry 8WP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
169 171anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 190first strand
Strand 2
C
195 200anti-parallel
Strand 3
C
33 40parallel
Strand 4
C
220 226parallel
Strand 5
C
263 269parallel
Strand 6
C
319 322parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 51first strand
Strand 2
D
336 339anti-parallel
Strand 3
D
327 330anti-parallel
Strand 4
D
317 320anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 62first strand
Strand 2
D
71 74anti-parallel
Strand 3
D
78 82anti-parallel
Strand 4
D
89 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 105first strand
Strand 2
D
111 116anti-parallel
Strand 3
D
121 125anti-parallel
Strand 4
D
134 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
146 151first strand
Strand 2
D
157 161anti-parallel
Strand 3
D
165 169anti-parallel
Strand 4
D
176 181anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 192first strand
Strand 2
D
198 203anti-parallel
Strand 3
D
207 212anti-parallel
Strand 4
D
218 223anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
229 234first strand
Strand 2
D
240 245anti-parallel
Strand 3
D
250 254anti-parallel
Strand 4
D
259 264anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
273 278first strand
Strand 2
D
284 289anti-parallel
Strand 3
D
294 298anti-parallel
Strand 4
D
304 308anti-parallel
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