Analysis of interatomic Contacts of Structural Units in PDB entry:
8WP2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WP2 entry

There are 16 chains in PDB entry 8WP2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 506
B	MET 1	ASN 417
C	MET 1	TYR 506
D	MET 1	ASN 417
E	U 1	U 17
F	A 3	C 22
G	U 1	U 18
H	A 3	C 22
I	LEU 4	TYR 506
J	ARG 2	GLU 420
K	MET 1	TYR 506
L	MET 1	ASN 417
M	U 1	U 18
N	A 3	C 22
O	U 1	U 17
P	A 3	C 22

There are116 helices in PDB entry 8WP2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	46	58	Right-handed alpha
Helix 3	AA3	A	77	83	Right-handed alpha
Helix 4	AA4	A	97	106	Right-handed alpha
Helix 5	AA5	A	109	131	Right-handed alpha
Helix 6	AA6	A	144	149	Right-handed alpha
Helix 7	AA7	A	205	213	Right-handed alpha
Helix 8	AA8	A	226	230	Right-handed alpha
Helix 9	AA9	A	245	249	Right-handed 310
Helix 10	AB1	A	250	264	Right-handed alpha
Helix 11	AB2	A	331	351	Right-handed alpha
Helix 12	AB3	A	366	375	Right-handed alpha
Helix 13	AB4	A	451	462	Right-handed alpha
Helix 14	AB5	A	477	482	Right-handed alpha
Helix 15	AB6	A	483	491	Right-handed alpha
Helix 16	AB7	B	10	29	Right-handed alpha
Helix 17	AB8	B	44	55	Right-handed alpha
Helix 18	AB9	B	71	89	Right-handed alpha
Helix 19	AC1	B	90	94	Right-handed 310
Helix 20	AC2	B	109	114	Right-handed alpha
Helix 21	AC3	B	123	138	Right-handed alpha
Helix 22	AC4	B	145	151	Right-handed alpha
Helix 23	AC5	B	151	159	Right-handed alpha
Helix 24	AC6	B	219	223	Right-handed 310
Helix 25	AC7	B	234	238	Right-handed 310
Helix 26	AC8	B	243	248	Right-handed alpha
Helix 27	AC9	B	257	271	Right-handed alpha
Helix 28	AD1	B	273	280	Right-handed alpha
Helix 29	AD2	B	300	302	Right-handed 310
Helix 30	AD3	B	353	365	Right-handed alpha
Helix 31	AD4	B	369	385	Right-handed alpha
Helix 32	AD5	C	15	17	Right-handed 310
Helix 33	AD6	C	22	30	Right-handed alpha
Helix 34	AD7	C	47	61	Right-handed alpha
Helix 35	AD8	C	78	83	Right-handed alpha
Helix 36	AD9	C	97	104	Right-handed alpha
Helix 37	AE1	C	110	131	Right-handed alpha
Helix 38	AE2	C	145	151	Right-handed alpha
Helix 39	AE3	C	205	214	Right-handed alpha
Helix 40	AE4	C	250	264	Right-handed alpha
Helix 41	AE5	C	331	344	Right-handed alpha
Helix 42	AE6	C	344	350	Right-handed alpha
Helix 43	AE7	C	366	377	Right-handed alpha
Helix 44	AE8	C	451	462	Right-handed alpha
Helix 45	AE9	C	477	493	Right-handed alpha
Helix 46	AF1	C	502	506	Right-handed 310
Helix 47	AF2	D	17	26	Right-handed alpha
Helix 48	AF3	D	49	57	Right-handed alpha
Helix 49	AF4	D	71	88	Right-handed alpha
Helix 50	AF5	D	125	139	Right-handed alpha
Helix 51	AF6	D	147	157	Right-handed alpha
Helix 52	AF7	D	220	224	Right-handed 310
Helix 53	AF8	D	227	233	Right-handed 310
Helix 54	AF9	D	234	236	Right-handed 310
Helix 55	AG1	D	243	247	Right-handed alpha
Helix 56	AG2	D	257	278	Right-handed alpha
Helix 57	AG3	D	300	304	Right-handed 310
Helix 58	AG4	D	353	362	Right-handed alpha
Helix 59	AG5	D	363	368	Right-handed 310
Helix 60	AG6	D	370	385	Right-handed alpha
Helix 61	AG7	I	15	17	Right-handed 310
Helix 62	AG8	I	22	30	Right-handed alpha
Helix 63	AG9	I	46	61	Right-handed alpha
Helix 64	AH1	I	78	83	Right-handed alpha
Helix 65	AH2	I	97	106	Right-handed alpha
Helix 66	AH3	I	110	132	Right-handed alpha
Helix 67	AH4	I	144	151	Right-handed alpha
Helix 68	AH5	I	205	218	Right-handed alpha
Helix 69	AH6	I	245	263	Right-handed alpha
Helix 70	AH7	I	331	343	Right-handed alpha
Helix 71	AH8	I	344	350	Right-handed alpha
Helix 72	AH9	I	366	376	Right-handed alpha
Helix 73	AI1	I	451	462	Right-handed alpha
Helix 74	AI2	I	477	490	Right-handed alpha
Helix 75	AI3	I	502	506	Right-handed 310
Helix 76	AI4	J	14	29	Right-handed alpha
Helix 77	AI5	J	48	55	Right-handed alpha
Helix 78	AI6	J	71	88	Right-handed alpha
Helix 79	AI7	J	123	138	Right-handed alpha
Helix 80	AI8	J	147	157	Right-handed alpha
Helix 81	AI9	J	199	203	Right-handed 310
Helix 82	AJ1	J	234	238	Right-handed 310
Helix 83	AJ2	J	243	249	Right-handed alpha
Helix 84	AJ3	J	257	280	Right-handed alpha
Helix 85	AJ4	J	353	365	Right-handed alpha
Helix 86	AJ5	J	366	368	Right-handed 310
Helix 87	AJ6	J	369	384	Right-handed alpha
Helix 88	AJ7	K	15	17	Right-handed 310
Helix 89	AJ8	K	47	57	Right-handed alpha
Helix 90	AJ9	K	77	82	Right-handed alpha
Helix 91	AK1	K	97	106	Right-handed alpha
Helix 92	AK2	K	109	131	Right-handed alpha
Helix 93	AK3	K	144	151	Right-handed alpha
Helix 94	AK4	K	206	213	Right-handed alpha
Helix 95	AK5	K	226	230	Right-handed alpha
Helix 96	AK6	K	250	263	Right-handed alpha
Helix 97	AK7	K	331	351	Right-handed alpha
Helix 98	AK8	K	366	377	Right-handed alpha
Helix 99	AK9	K	451	460	Right-handed alpha
Helix 100	AL1	K	477	491	Right-handed alpha
Helix 101	AL2	K	502	506	Right-handed 310
Helix 102	AL3	L	13	29	Right-handed alpha
Helix 103	AL4	L	44	55	Right-handed alpha
Helix 104	AL5	L	71	89	Right-handed alpha
Helix 105	AL6	L	90	94	Right-handed 310
Helix 106	AL7	L	109	114	Right-handed alpha
Helix 107	AL8	L	124	139	Right-handed alpha
Helix 108	AL9	L	147	157	Right-handed alpha
Helix 109	AM1	L	219	224	Right-handed 310
Helix 110	AM2	L	229	233	Right-handed 310
Helix 111	AM3	L	234	238	Right-handed 310
Helix 112	AM4	L	243	248	Right-handed alpha
Helix 113	AM5	L	257	280	Right-handed alpha
Helix 114	AM6	L	300	302	Right-handed 310
Helix 115	AM7	L	353	360	Right-handed alpha
Helix 116	AM8	L	369	382	Right-handed alpha

There are 49 sheets in PDB entry 8WP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	409	411	anti-parallel
Strand 3	A	417	420	anti-parallel
Strand 4	A	441	447	anti-parallel
Strand 5	A	382	389	anti-parallel
Strand 6	A	356	361	parallel
Strand 7	A	278	279	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	19	20	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	41	45	parallel
Strand 3	A	138	143	parallel
Strand 4	A	221	225	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	297	303	anti-parallel
Strand 3	A	311	317	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	4	6	parallel
Strand 3	B	57	60	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	118	119	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	409	412	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	334	335	anti-parallel
Strand 3	B	176	180	anti-parallel
Strand 4	B	402	404	anti-parallel
Strand 5	B	390	391	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	213	216	anti-parallel
Strand 3	B	184	188	anti-parallel
Strand 4	B	239	242	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	291	294	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	308	309	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	314	first strand
Strand 2	B	317	323	anti-parallel
Strand 3	B	339	344	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	D	402	412	parallel
Strand 3	D	169	180	anti-parallel
Strand 4	C	397	398	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	D	402	412	parallel
Strand 3	D	390	392	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	409	410	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	18	20	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	142	first strand
Strand 2	C	222	224	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	287	first strand
Strand 2	C	297	300	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	310	311	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	356	359	first strand
Strand 2	C	382	386	parallel
Strand 3	C	443	447	anti-parallel
Strand 4	C	417	418	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	32	33	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	213	216	anti-parallel
Strand 3	D	184	189	anti-parallel
Strand 4	D	238	242	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	294	first strand
Strand 2	D	317	327	anti-parallel
Strand 3	D	311	314	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	294	first strand
Strand 2	D	317	327	anti-parallel
Strand 3	D	335	344	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	6	first strand
Strand 2	I	409	410	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	19	20	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	95	first strand
Strand 2	I	43	45	parallel
Strand 3	I	139	142	parallel
Strand 4	I	221	224	parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	302	304	first strand
Strand 2	I	278	283	anti-parallel
Strand 3	I	356	361	parallel
Strand 4	I	382	389	parallel
Strand 5	I	442	447	anti-parallel
Strand 6	I	417	418	anti-parallel
Strand 7	I	412	414	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	285	287	first strand
Strand 2	I	297	299	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	397	398	first strand
Strand 2	J	165	172	anti-parallel
Strand 3	J	410	415	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	33	first strand
Strand 2	J	4	6	parallel
Strand 3	J	57	64	parallel
Strand 4	J	94	98	parallel
Strand 5	J	118	119	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	175	177	first strand
Strand 2	J	334	344	anti-parallel
Strand 3	J	317	328	anti-parallel
Strand 4	J	291	294	anti-parallel
Strand 5	J	283	286	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	175	177	first strand
Strand 2	J	334	344	anti-parallel
Strand 3	J	317	328	anti-parallel
Strand 4	J	311	314	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	207	210	first strand
Strand 2	J	213	216	anti-parallel
Strand 3	J	184	187	anti-parallel
Strand 4	J	239	242	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	390	394	first strand
Strand 2	J	400	404	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	396	398	first strand
Strand 2	L	169	173	anti-parallel
Strand 3	L	409	412	anti-parallel
Strand 4	K	2	6	parallel
Strand 5	K	409	410	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	20	first strand
Strand 2	K	12	13	anti-parallel
Strand 3	K	270	271	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	45	first strand
Strand 2	K	138	143	parallel
Strand 3	K	221	225	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	280	282	first strand
Strand 2	K	302	304	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	285	287	first strand
Strand 2	K	297	299	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	356	361	first strand
Strand 2	K	382	387	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	419	420	first strand
Strand 2	K	441	442	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	32	33	first strand
Strand 2	L	4	6	parallel
Strand 3	L	57	60	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	97	98	first strand
Strand 2	L	118	119	parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	175	177	first strand
Strand 2	L	334	337	anti-parallel
Strand 3	L	325	328	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	207	210	first strand
Strand 2	L	213	216	anti-parallel
Strand 3	L	184	189	anti-parallel
Strand 4	L	239	242	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	284	286	first strand
Strand 2	L	291	294	anti-parallel
Strand 3	L	319	323	anti-parallel
Strand 4	L	341	343	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	304	305	first strand
Strand 2	L	308	309	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	390	391	first strand
Strand 2	L	403	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WP2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WP2