Analysis of interatomic Contacts of Structural Units in PDB entry:
8WP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WP5 entry

There is 1 chain in PDB entry 8WP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2SER 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8WP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 30Right-handed alpha
Helix 2
AA2
A
49 56Right-handed alpha
Helix 3
AA3
A
71 77Right-handed alpha
Helix 4
AA4
A
84 93Right-handed alpha
Helix 5
AA5
A
93 103Right-handed alpha
Helix 6
AA6
A
123 127Right-handed 310
Helix 7
AA7
A
128 135Right-handed alpha
Helix 8
AA8
A
146 162Right-handed alpha
Helix 9
AA9
A
166 171Right-handed 310
Helix 10
AB1
A
189 191Right-handed 310
Helix 11
AB2
A
192 197Right-handed alpha
Helix 12
AB3
A
199 211Right-handed alpha
Helix 13
AB4
A
212 215Right-handed 310
Helix 14
AB5
A
227 232Right-handed alpha
Helix 15
AB6
A
257 269Right-handed alpha
Helix 16
AB7
A
288 303Right-handed alpha
Helix 17
AB8
A
335 340Right-handed alpha
Helix 18
AB9
A
351 358Right-handed alpha
Helix 19
AC1
A
369 379Right-handed alpha
Helix 20
AC2
A
391 402Right-handed alpha
Helix 21
AC3
A
428 440Right-handed alpha
Helix 22
AC4
A
446 464Right-handed alpha
Helix 23
AC5
A
467 485Right-handed alpha
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There are 3 sheets in PDB entry 8WP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
35 41parallel
Strand 3
A
5 10parallel
Strand 4
A
116 121parallel
Strand 5
A
139 143parallel
Strand 6
A
217 220parallel
Strand 7
A
238 241parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
186 187anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
A
305 309parallel
Strand 3
A
276 279parallel
Strand 4
A
361 366parallel
Strand 5
A
383 385parallel
Strand 6
A
406 408parallel
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