Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WPF entry

There are 10 chains in PDB entry 8WPF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1006
B	MET -10	PHE 425
C	MET 1	TYR 218
D	ARG 136	LYS 204
E	SER 140	GLY 196
F	LEU 139	LYS 203
G	SER 140	GLY 196
H	C 5	C 35
I	C 4	A 5
I	G 7	G 44

There are 62 helices in PDB entry 8WPF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	50	Right-handed alpha
Helix 2	AA2	A	108	117	Right-handed alpha
Helix 3	AA3	A	128	130	Right-handed 310
Helix 4	AA4	A	144	149	Right-handed alpha
Helix 5	AA5	A	209	219	Right-handed alpha
Helix 6	AA6	A	240	253	Right-handed alpha
Helix 7	AA7	A	267	280	Right-handed alpha
Helix 8	AA8	A	331	339	Right-handed alpha
Helix 9	AA9	A	345	354	Right-handed alpha
Helix 10	AB1	A	380	390	Right-handed alpha
Helix 11	AB2	A	439	446	Right-handed alpha
Helix 12	AB3	A	448	474	Right-handed alpha
Helix 13	AB4	A	474	487	Right-handed alpha
Helix 14	AB5	A	489	493	Right-handed 310
Helix 15	AB6	A	497	513	Right-handed alpha
Helix 16	AB7	A	552	562	Right-handed alpha
Helix 17	AB8	A	576	591	Right-handed alpha
Helix 18	AB9	A	621	644	Right-handed alpha
Helix 19	AC1	A	646	673	Right-handed alpha
Helix 20	AC2	A	680	703	Right-handed alpha
Helix 21	AC3	A	763	781	Right-handed alpha
Helix 22	AC4	A	836	857	Right-handed alpha
Helix 23	AC5	A	860	883	Right-handed alpha
Helix 24	AC6	A	886	890	Right-handed 310
Helix 25	AC7	A	905	918	Right-handed alpha
Helix 26	AC8	A	947	949	Right-handed 310
Helix 27	AC9	A	967	983	Right-handed alpha
Helix 28	AD1	A	985	998	Right-handed alpha
Helix 29	AD2	B	3	19	Right-handed alpha
Helix 30	AD3	B	20	23	Right-handed 310
Helix 31	AD4	B	24	42	Right-handed alpha
Helix 32	AD5	B	107	121	Right-handed alpha
Helix 33	AD6	B	147	158	Right-handed alpha
Helix 34	AD7	B	177	188	Right-handed alpha
Helix 35	AD8	B	249	256	Right-handed alpha
Helix 36	AD9	B	285	298	Right-handed alpha
Helix 37	AE1	B	315	323	Right-handed alpha
Helix 38	AE2	B	330	341	Right-handed alpha
Helix 39	AE3	B	341	351	Right-handed alpha
Helix 40	AE4	B	352	361	Right-handed alpha
Helix 41	AE5	B	364	373	Right-handed alpha
Helix 42	AE6	B	393	396	Right-handed 310
Helix 43	AE7	B	397	406	Right-handed alpha
Helix 44	AE8	B	406	425	Right-handed alpha
Helix 45	AE9	C	19	21	Right-handed 310
Helix 46	AF1	C	22	38	Right-handed alpha
Helix 47	AF2	C	45	49	Right-handed 310
Helix 48	AF3	C	86	101	Right-handed alpha
Helix 49	AF4	C	133	152	Right-handed alpha
Helix 50	AF5	C	165	170	Right-handed alpha
Helix 51	AF6	C	184	186	Right-handed 310
Helix 52	AF7	C	187	192	Right-handed alpha
Helix 53	AF8	C	193	205	Right-handed alpha
Helix 54	AF9	C	211	214	Right-handed 310
Helix 55	AG1	D	141	174	Right-handed alpha
Helix 56	AG2	D	179	199	Right-handed alpha
Helix 57	AG3	E	141	164	Right-handed alpha
Helix 58	AG4	E	168	196	Right-handed alpha
Helix 59	AG5	F	142	174	Right-handed alpha
Helix 60	AG6	F	179	200	Right-handed alpha
Helix 61	AG7	G	141	164	Right-handed alpha
Helix 62	AG8	G	168	195	Right-handed alpha

There are 20 sheets in PDB entry 8WPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	139	142	anti-parallel
Strand 3	A	29	35	parallel
Strand 4	A	17	24	anti-parallel
Strand 5	A	2	11	anti-parallel
Strand 6	A	124	126	anti-parallel
Strand 7	A	151	153	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	43	first strand
Strand 2	A	84	93	anti-parallel
Strand 3	A	56	67	anti-parallel
Strand 4	A	515	518	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	568	574	parallel
Strand 3	A	610	616	anti-parallel
Strand 4	A	596	601	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	236	239	parallel
Strand 3	A	197	204	parallel
Strand 4	A	183	191	anti-parallel
Strand 5	A	162	169	anti-parallel
Strand 6	A	258	261	parallel
Strand 7	A	327	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	294	296	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	305	first strand
Strand 2	A	313	320	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	363	first strand
Strand 2	A	367	373	anti-parallel
Strand 3	A	414	420	anti-parallel
Strand 4	A	401	410	anti-parallel
Strand 5	A	394	397	anti-parallel
Strand 6	A	429	432	anti-parallel
Strand 7	A	355	363	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	541	first strand
Strand 2	A	789	802	anti-parallel
Strand 3	A	545	550	anti-parallel
Strand 4	A	754	759	anti-parallel
Strand 5	A	744	751	anti-parallel
Strand 6	A	705	708	anti-parallel
Strand 7	A	711	713	anti-parallel
Strand 8	A	733	734	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	541	first strand
Strand 2	A	789	802	anti-parallel
Strand 3	A	805	812	anti-parallel
Strand 4	A	822	826	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	892	895	first strand
Strand 2	A	927	935	anti-parallel
Strand 3	A	951	954	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	892	895	first strand
Strand 2	A	927	935	anti-parallel
Strand 3	A	964	966	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	71	first strand
Strand 2	B	174	176	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	170	first strand
Strand 2	B	74	82	anti-parallel
Strand 3	B	194	201	anti-parallel
Strand 4	B	207	210	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	85	89	anti-parallel
Strand 3	B	124	132	anti-parallel
Strand 4	B	135	143	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	229	first strand
Strand 2	B	232	239	anti-parallel
Strand 3	B	244	246	anti-parallel
Strand 4	B	273	275	parallel
Strand 5	B	263	268	anti-parallel
Strand 6	B	214	229	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	304	first strand
Strand 2	B	307	310	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	380	first strand
Strand 2	B	383	389	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	12	15	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	62	66	parallel
Strand 3	C	154	158	parallel
Strand 4	C	175	179	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	216	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WPF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPF