Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WPG entry

There are 2 chains in PDB entry 8WPG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	TYR 20	VAL 872
A	TYR 20	VAL 872

There are 64 helices in PDB entry 8WPG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	64	84	Right-handed alpha
Helix 2	AA2	B	103	115	Right-handed alpha
Helix 3	AA3	B	115	124	Right-handed alpha
Helix 4	AA4	B	146	158	Right-handed alpha
Helix 5	AA5	B	171	176	Right-handed 310
Helix 6	AA6	B	190	204	Right-handed alpha
Helix 7	AA7	B	218	233	Right-handed alpha
Helix 8	AA8	B	248	261	Right-handed alpha
Helix 9	AA9	B	272	287	Right-handed alpha
Helix 10	AB1	B	296	301	Right-handed alpha
Helix 11	AB2	B	307	309	Right-handed 310
Helix 12	AB3	B	310	315	Right-handed alpha
Helix 13	AB4	B	329	336	Right-handed alpha
Helix 14	AB5	B	347	357	Right-handed alpha
Helix 15	AB6	B	415	436	Right-handed alpha
Helix 16	AB7	B	451	455	Right-handed 310
Helix 17	AB8	B	456	466	Right-handed alpha
Helix 18	AB9	B	525	528	Right-handed 310
Helix 19	AC1	B	529	533	Right-handed 310
Helix 20	AC2	B	612	637	Right-handed alpha
Helix 21	AC3	B	649	665	Right-handed alpha
Helix 22	AC4	B	666	668	Right-handed 310
Helix 23	AC5	B	673	678	Right-handed alpha
Helix 24	AC6	B	679	699	Right-handed alpha
Helix 25	AC7	B	723	746	Right-handed alpha
Helix 26	AC8	B	769	791	Right-handed alpha
Helix 27	AC9	B	802	820	Right-handed alpha
Helix 28	AD1	B	821	828	Right-handed alpha
Helix 29	AD2	B	830	833	Right-handed 310
Helix 30	AD3	B	834	853	Right-handed alpha
Helix 31	AD4	B	853	858	Right-handed alpha
Helix 32	AD5	A	64	84	Right-handed alpha
Helix 33	AD6	A	103	115	Right-handed alpha
Helix 34	AD7	A	115	123	Right-handed alpha
Helix 35	AD8	A	146	158	Right-handed alpha
Helix 36	AD9	A	171	176	Right-handed 310
Helix 37	AE1	A	190	204	Right-handed alpha
Helix 38	AE2	A	218	233	Right-handed alpha
Helix 39	AE3	A	248	262	Right-handed alpha
Helix 40	AE4	A	272	287	Right-handed alpha
Helix 41	AE5	A	296	301	Right-handed alpha
Helix 42	AE6	A	307	309	Right-handed 310
Helix 43	AE7	A	310	315	Right-handed alpha
Helix 44	AE8	A	329	336	Right-handed alpha
Helix 45	AE9	A	347	357	Right-handed alpha
Helix 46	AF1	A	400	404	Right-handed 310
Helix 47	AF2	A	415	436	Right-handed alpha
Helix 48	AF3	A	444	448	Right-handed 310
Helix 49	AF4	A	451	455	Right-handed 310
Helix 50	AF5	A	456	466	Right-handed alpha
Helix 51	AF6	A	525	528	Right-handed 310
Helix 52	AF7	A	529	533	Right-handed 310
Helix 53	AF8	A	610	637	Right-handed alpha
Helix 54	AF9	A	640	646	Right-handed alpha
Helix 55	AG1	A	647	665	Right-handed alpha
Helix 56	AG2	A	666	668	Right-handed 310
Helix 57	AG3	A	673	679	Right-handed alpha
Helix 58	AG4	A	680	700	Right-handed alpha
Helix 59	AG5	A	724	746	Right-handed alpha
Helix 60	AG6	A	769	794	Right-handed alpha
Helix 61	AG7	A	795	797	Right-handed 310
Helix 62	AG8	A	803	820	Right-handed alpha
Helix 63	AG9	A	821	826	Right-handed alpha
Helix 64	AH1	A	831	861	Right-handed alpha

There are 14 sheets in PDB entry 8WPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	93	99	anti-parallel
Strand 3	B	32	38	parallel
Strand 4	B	138	142	parallel
Strand 5	B	164	166	parallel
Strand 6	B	183	185	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	243	first strand
Strand 2	B	208	214	parallel
Strand 3	B	266	270	parallel
Strand 4	B	292	295	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	489	496	anti-parallel
Strand 3	B	503	511	anti-parallel
Strand 4	B	521	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	470	first strand
Strand 2	B	476	478	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	563	564	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	591	first strand
Strand 2	B	598	600	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	604	first strand
Strand 2	B	760	763	parallel
Strand 3	B	752	753	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	93	99	anti-parallel
Strand 3	A	32	38	parallel
Strand 4	A	138	142	parallel
Strand 5	A	164	166	parallel
Strand 6	A	183	185	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	243	first strand
Strand 2	A	208	214	parallel
Strand 3	A	266	270	parallel
Strand 4	A	292	295	parallel
Strand 5	A	318	322	parallel
Strand 6	A	489	496	anti-parallel
Strand 7	A	503	511	anti-parallel
Strand 8	A	521	523	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	470	first strand
Strand 2	A	476	478	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	554	first strand
Strand 2	A	563	567	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	573	first strand
Strand 2	A	583	584	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	591	first strand
Strand 2	A	598	600	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	760	764	parallel
Strand 3	A	751	753	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WPG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPG