Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WPI entry

There are 2 chains in PDB entry 8WPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 18TRP 335
B
 LYS 18TRP 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8WPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 38Right-handed alpha
Helix 2
AA2
A
47 55Right-handed alpha
Helix 3
AA3
A
70 77Right-handed alpha
Helix 4
AA4
A
94 101Right-handed alpha
Helix 5
AA5
A
112 129Right-handed alpha
Helix 6
AA6
A
130 140Right-handed alpha
Helix 7
AA7
A
142 148Right-handed 310
Helix 8
AA8
A
165 178Right-handed alpha
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
205 213Right-handed alpha
Helix 11
AB2
A
231 238Right-handed alpha
Helix 12
AB3
A
249 253Right-handed 310
Helix 13
AB4
A
254 264Right-handed alpha
Helix 14
AB5
A
284 289Right-handed 310
Helix 15
AB6
A
302 322Right-handed alpha
Helix 16
AB7
A
331 335Right-handed 310
Helix 17
AB8
B
27 38Right-handed alpha
Helix 18
AB9
B
47 55Right-handed alpha
Helix 19
AC1
B
70 77Right-handed alpha
Helix 20
AC2
B
94 101Right-handed alpha
Helix 21
AC3
B
112 129Right-handed alpha
Helix 22
AC4
B
130 140Right-handed alpha
Helix 23
AC5
B
142 148Right-handed 310
Helix 24
AC6
B
165 178Right-handed alpha
Helix 25
AC7
B
193 198Right-handed alpha
Helix 26
AC8
B
205 213Right-handed alpha
Helix 27
AC9
B
231 238Right-handed alpha
Helix 28
AD1
B
249 253Right-handed 310
Helix 29
AD2
B
254 264Right-handed alpha
Helix 30
AD3
B
284 289Right-handed 310
Helix 31
AD4
B
302 322Right-handed alpha
Helix 32
AD5
B
331 335Right-handed 310
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There are 4 sheets in PDB entry 8WPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
19 22parallel
Strand 3
A
60 63parallel
Strand 4
A
82 85parallel
Strand 5
A
104 106parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
182 186parallel
Strand 3
A
158 162parallel
Strand 4
A
215 218parallel
Strand 5
A
243 246parallel
Strand 6
A
269 272parallel
Strand 7
A
292 294parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 43first strand
Strand 2
B
19 22parallel
Strand 3
B
60 63parallel
Strand 4
B
82 85parallel
Strand 5
B
104 106parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
182 186parallel
Strand 3
B
158 162parallel
Strand 4
B
215 218parallel
Strand 5
B
243 246parallel
Strand 6
B
269 272parallel
Strand 7
B
292 294parallel
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