Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WPK entry

There are 9 chains in PDB entry 8WPK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1006
B	MET -10	GLU 426
C	MET 1	TYR 218
D	ARG 136	LYS 204
E	SER 140	GLY 196
F	LEU 139	LYS 203
G	SER 140	GLY 196
H	C 5	C 35
I	G 7	G 44

There are 62 helices in PDB entry 8WPK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	49	Right-handed alpha
Helix 2	AA2	A	108	117	Right-handed alpha
Helix 3	AA3	A	128	130	Right-handed 310
Helix 4	AA4	A	144	149	Right-handed alpha
Helix 5	AA5	A	206	208	Right-handed 310
Helix 6	AA6	A	209	220	Right-handed alpha
Helix 7	AA7	A	240	253	Right-handed alpha
Helix 8	AA8	A	267	280	Right-handed alpha
Helix 9	AA9	A	331	339	Right-handed alpha
Helix 10	AB1	A	345	354	Right-handed alpha
Helix 11	AB2	A	380	390	Right-handed alpha
Helix 12	AB3	A	439	446	Right-handed alpha
Helix 13	AB4	A	448	474	Right-handed alpha
Helix 14	AB5	A	474	487	Right-handed alpha
Helix 15	AB6	A	489	493	Right-handed 310
Helix 16	AB7	A	497	513	Right-handed alpha
Helix 17	AB8	A	552	561	Right-handed alpha
Helix 18	AB9	A	576	591	Right-handed alpha
Helix 19	AC1	A	621	643	Right-handed alpha
Helix 20	AC2	A	646	672	Right-handed alpha
Helix 21	AC3	A	680	703	Right-handed alpha
Helix 22	AC4	A	763	781	Right-handed alpha
Helix 23	AC5	A	836	857	Right-handed alpha
Helix 24	AC6	A	860	883	Right-handed alpha
Helix 25	AC7	A	886	891	Right-handed 310
Helix 26	AC8	A	905	918	Right-handed alpha
Helix 27	AC9	A	946	949	Right-handed 310
Helix 28	AD1	A	967	983	Right-handed alpha
Helix 29	AD2	A	985	998	Right-handed alpha
Helix 30	AD3	B	3	19	Right-handed alpha
Helix 31	AD4	B	24	42	Right-handed alpha
Helix 32	AD5	B	107	121	Right-handed alpha
Helix 33	AD6	B	148	158	Right-handed alpha
Helix 34	AD7	B	177	189	Right-handed alpha
Helix 35	AD8	B	249	256	Right-handed alpha
Helix 36	AD9	B	285	298	Right-handed alpha
Helix 37	AE1	B	315	324	Right-handed alpha
Helix 38	AE2	B	330	341	Right-handed alpha
Helix 39	AE3	B	341	351	Right-handed alpha
Helix 40	AE4	B	352	362	Right-handed alpha
Helix 41	AE5	B	364	373	Right-handed alpha
Helix 42	AE6	B	391	396	Right-handed 310
Helix 43	AE7	B	397	406	Right-handed alpha
Helix 44	AE8	B	406	426	Right-handed alpha
Helix 45	AE9	C	16	21	Right-handed 310
Helix 46	AF1	C	22	38	Right-handed alpha
Helix 47	AF2	C	45	49	Right-handed 310
Helix 48	AF3	C	86	101	Right-handed alpha
Helix 49	AF4	C	110	113	Right-handed 310
Helix 50	AF5	C	133	152	Right-handed alpha
Helix 51	AF6	C	165	170	Right-handed alpha
Helix 52	AF7	C	184	188	Right-handed 310
Helix 53	AF8	C	193	205	Right-handed alpha
Helix 54	AF9	C	211	214	Right-handed 310
Helix 55	AG1	D	142	173	Right-handed alpha
Helix 56	AG2	D	179	198	Right-handed alpha
Helix 57	AG3	E	141	164	Right-handed alpha
Helix 58	AG4	E	168	196	Right-handed alpha
Helix 59	AG5	F	142	173	Right-handed alpha
Helix 60	AG6	F	179	201	Right-handed alpha
Helix 61	AG7	G	141	164	Right-handed alpha
Helix 62	AG8	G	168	195	Right-handed alpha

There are 19 sheets in PDB entry 8WPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	139	142	anti-parallel
Strand 3	A	29	35	parallel
Strand 4	A	17	24	anti-parallel
Strand 5	A	2	10	anti-parallel
Strand 6	A	124	126	anti-parallel
Strand 7	A	151	153	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	43	first strand
Strand 2	A	86	93	anti-parallel
Strand 3	A	56	67	anti-parallel
Strand 4	A	515	518	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	568	574	parallel
Strand 3	A	610	616	anti-parallel
Strand 4	A	596	601	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	236	239	parallel
Strand 3	A	197	204	parallel
Strand 4	A	183	191	anti-parallel
Strand 5	A	162	169	anti-parallel
Strand 6	A	258	261	parallel
Strand 7	A	327	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	294	296	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	305	first strand
Strand 2	A	313	320	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	363	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	415	420	anti-parallel
Strand 4	A	401	410	anti-parallel
Strand 5	A	394	397	anti-parallel
Strand 6	A	428	432	anti-parallel
Strand 7	A	355	363	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	732	734	first strand
Strand 2	A	711	713	anti-parallel
Strand 3	A	705	708	anti-parallel
Strand 4	A	744	751	anti-parallel
Strand 5	A	754	759	anti-parallel
Strand 6	A	545	550	anti-parallel
Strand 7	A	789	802	anti-parallel
Strand 8	A	805	812	anti-parallel
Strand 9	A	822	826	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	892	895	first strand
Strand 2	A	927	935	anti-parallel
Strand 3	A	951	954	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	892	895	first strand
Strand 2	A	927	935	anti-parallel
Strand 3	A	964	966	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	82	first strand
Strand 2	B	194	201	anti-parallel
Strand 3	B	208	210	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	95	97	anti-parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	124	131	anti-parallel
Strand 5	B	136	143	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	275	first strand
Strand 2	B	266	268	anti-parallel
Strand 3	B	214	218	anti-parallel
Strand 4	D	138	140	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	227	first strand
Strand 2	B	232	239	anti-parallel
Strand 3	B	244	246	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	227	first strand
Strand 2	B	232	239	anti-parallel
Strand 3	B	307	309	anti-parallel
Strand 4	B	302	304	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	379	first strand
Strand 2	B	384	389	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	13	15	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	62	66	parallel
Strand 3	C	154	158	parallel
Strand 4	C	175	179	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	216	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WPK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPK