Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WPL entry

There are 4 chains in PDB entry 8WPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 30	LEU 779
B	ARG 15	LEU 754
C	ARG 15	LEU 754
D	ASP 16	LEU 754

There are145 helices in PDB entry 8WPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	56	Right-handed alpha
Helix 2	AA2	A	59	73	Right-handed alpha
Helix 3	AA3	A	86	94	Right-handed alpha
Helix 4	AA4	A	96	106	Right-handed alpha
Helix 5	AA5	A	112	120	Right-handed alpha
Helix 6	AA6	A	122	130	Right-handed alpha
Helix 7	AA7	A	161	170	Right-handed alpha
Helix 8	AA8	A	171	179	Right-handed alpha
Helix 9	AA9	A	197	221	Right-handed alpha
Helix 10	AB1	A	222	229	Right-handed alpha
Helix 11	AB2	A	232	251	Right-handed alpha
Helix 12	AB3	A	254	274	Right-handed alpha
Helix 13	AB4	A	278	287	Right-handed alpha
Helix 14	AB5	A	307	316	Right-handed alpha
Helix 15	AB6	A	318	323	Right-handed alpha
Helix 16	AB7	A	324	337	Right-handed alpha
Helix 17	AB8	A	339	343	Right-handed 310
Helix 18	AB9	A	346	360	Right-handed alpha
Helix 19	AC1	A	360	371	Right-handed alpha
Helix 20	AC2	A	374	378	Right-handed 310
Helix 21	AC3	A	382	408	Right-handed alpha
Helix 22	AC4	A	421	445	Right-handed alpha
Helix 23	AC5	A	447	453	Right-handed alpha
Helix 24	AC6	A	453	480	Right-handed alpha
Helix 25	AC7	A	485	489	Right-handed 310
Helix 26	AC8	A	493	512	Right-handed alpha
Helix 27	AC9	A	513	517	Right-handed 310
Helix 28	AD1	A	523	560	Right-handed alpha
Helix 29	AD2	A	580	585	Right-handed 310
Helix 30	AD3	A	586	596	Right-handed alpha
Helix 31	AD4	A	605	610	Right-handed 310
Helix 32	AD5	A	615	635	Right-handed alpha
Helix 33	AD6	A	636	653	Right-handed alpha
Helix 34	AD7	A	655	673	Right-handed alpha
Helix 35	AD8	A	722	754	Right-handed alpha
Helix 36	AD9	A	757	779	Right-handed alpha
Helix 37	AE1	B	30	43	Right-handed alpha
Helix 38	AE2	B	44	57	Right-handed alpha
Helix 39	AE3	B	72	80	Right-handed alpha
Helix 40	AE4	B	82	92	Right-handed alpha
Helix 41	AE5	B	98	107	Right-handed alpha
Helix 42	AE6	B	110	116	Right-handed alpha
Helix 43	AE7	B	144	153	Right-handed alpha
Helix 44	AE8	B	154	165	Right-handed alpha
Helix 45	AE9	B	178	188	Right-handed alpha
Helix 46	AF1	B	188	204	Right-handed alpha
Helix 47	AF2	B	205	213	Right-handed alpha
Helix 48	AF3	B	215	234	Right-handed alpha
Helix 49	AF4	B	237	257	Right-handed alpha
Helix 50	AF5	B	261	270	Right-handed alpha
Helix 51	AF6	B	286	295	Right-handed alpha
Helix 52	AF7	B	303	315	Right-handed alpha
Helix 53	AF8	B	325	338	Right-handed alpha
Helix 54	AF9	B	339	346	Right-handed alpha
Helix 55	AG1	B	353	359	Right-handed alpha
Helix 56	AG2	B	361	385	Right-handed alpha
Helix 57	AG3	B	406	423	Right-handed alpha
Helix 58	AG4	B	426	432	Right-handed alpha
Helix 59	AG5	B	432	458	Right-handed alpha
Helix 60	AG6	B	472	491	Right-handed alpha
Helix 61	AG7	B	492	498	Right-handed 310
Helix 62	AG8	B	502	539	Right-handed alpha
Helix 63	AG9	B	563	574	Right-handed alpha
Helix 64	AH1	B	580	585	Right-handed 310
Helix 65	AH2	B	590	610	Right-handed alpha
Helix 66	AH3	B	611	628	Right-handed alpha
Helix 67	AH4	B	630	648	Right-handed alpha
Helix 68	AH5	B	654	658	Right-handed 310
Helix 69	AH6	B	696	726	Right-handed alpha
Helix 70	AH7	B	732	754	Right-handed alpha
Helix 71	AH8	C	30	43	Right-handed alpha
Helix 72	AH9	C	44	57	Right-handed alpha
Helix 73	AI1	C	72	80	Right-handed alpha
Helix 74	AI2	C	82	92	Right-handed alpha
Helix 75	AI3	C	98	106	Right-handed alpha
Helix 76	AI4	C	110	117	Right-handed alpha
Helix 77	AI5	C	144	153	Right-handed alpha
Helix 78	AI6	C	154	165	Right-handed alpha
Helix 79	AI7	C	178	188	Right-handed alpha
Helix 80	AI8	C	188	204	Right-handed alpha
Helix 81	AI9	C	205	213	Right-handed alpha
Helix 82	AJ1	C	215	234	Right-handed alpha
Helix 83	AJ2	C	237	257	Right-handed alpha
Helix 84	AJ3	C	261	270	Right-handed alpha
Helix 85	AJ4	C	286	295	Right-handed alpha
Helix 86	AJ5	C	303	315	Right-handed alpha
Helix 87	AJ6	C	325	339	Right-handed alpha
Helix 88	AJ7	C	339	350	Right-handed alpha
Helix 89	AJ8	C	353	359	Right-handed alpha
Helix 90	AJ9	C	361	385	Right-handed alpha
Helix 91	AK1	C	402	404	Right-handed 310
Helix 92	AK2	C	405	423	Right-handed alpha
Helix 93	AK3	C	426	431	Right-handed alpha
Helix 94	AK4	C	432	459	Right-handed alpha
Helix 95	AK5	C	464	468	Right-handed 310
Helix 96	AK6	C	472	491	Right-handed alpha
Helix 97	AK7	C	492	498	Right-handed 310
Helix 98	AK8	C	501	512	Right-handed alpha
Helix 99	AK9	C	512	539	Right-handed alpha
Helix 100	AL1	C	540	542	Right-handed 310
Helix 101	AL2	C	563	573	Right-handed alpha
Helix 102	AL3	C	580	585	Right-handed 310
Helix 103	AL4	C	590	611	Right-handed alpha
Helix 104	AL5	C	611	628	Right-handed alpha
Helix 105	AL6	C	630	648	Right-handed alpha
Helix 106	AL7	C	695	726	Right-handed alpha
Helix 107	AL8	C	732	754	Right-handed alpha
Helix 108	AL9	D	30	43	Right-handed alpha
Helix 109	AM1	D	45	57	Right-handed alpha
Helix 110	AM2	D	72	80	Right-handed alpha
Helix 111	AM3	D	82	91	Right-handed alpha
Helix 112	AM4	D	98	107	Right-handed alpha
Helix 113	AM5	D	111	116	Right-handed alpha
Helix 114	AM6	D	144	153	Right-handed alpha
Helix 115	AM7	D	154	165	Right-handed alpha
Helix 116	AM8	D	178	188	Right-handed alpha
Helix 117	AM9	D	188	204	Right-handed alpha
Helix 118	AN1	D	205	213	Right-handed alpha
Helix 119	AN2	D	215	234	Right-handed alpha
Helix 120	AN3	D	237	258	Right-handed alpha
Helix 121	AN4	D	261	270	Right-handed alpha
Helix 122	AN5	D	286	295	Right-handed alpha
Helix 123	AN6	D	297	302	Right-handed alpha
Helix 124	AN7	D	303	315	Right-handed alpha
Helix 125	AN8	D	320	324	Right-handed 310
Helix 126	AN9	D	325	339	Right-handed alpha
Helix 127	AO1	D	339	350	Right-handed alpha
Helix 128	AO2	D	353	359	Right-handed alpha
Helix 129	AO3	D	361	385	Right-handed alpha
Helix 130	AO4	D	402	405	Right-handed 310
Helix 131	AO5	D	406	423	Right-handed alpha
Helix 132	AO6	D	426	432	Right-handed alpha
Helix 133	AO7	D	432	458	Right-handed alpha
Helix 134	AO8	D	464	468	Right-handed 310
Helix 135	AO9	D	472	491	Right-handed alpha
Helix 136	AP1	D	492	498	Right-handed 310
Helix 137	AP2	D	501	539	Right-handed alpha
Helix 138	AP3	D	563	573	Right-handed alpha
Helix 139	AP4	D	580	585	Right-handed 310
Helix 140	AP5	D	590	610	Right-handed alpha
Helix 141	AP6	D	611	628	Right-handed alpha
Helix 142	AP7	D	630	646	Right-handed alpha
Helix 143	AP8	D	654	659	Right-handed alpha
Helix 144	AP9	D	696	727	Right-handed alpha
Helix 145	AQ1	D	733	754	Right-handed alpha

There are 4 sheets in PDB entry 8WPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	B	167	169	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	D	17	20	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	C	167	169	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	20	first strand
Strand 2	D	166	169	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPL