Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WPM entry

There are 4 chains in PDB entry 8WPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 30LEU 779
B
 ARG 15LEU 754
C
 ARG 15LEU 754
D
 ASP 16LEU 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are144 helices in PDB entry 8WPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 56Right-handed alpha
Helix 2
AA2
A
59 73Right-handed alpha
Helix 3
AA3
A
86 94Right-handed alpha
Helix 4
AA4
A
97 107Right-handed alpha
Helix 5
AA5
A
113 120Right-handed alpha
Helix 6
AA6
A
123 130Right-handed alpha
Helix 7
AA7
A
161 170Right-handed alpha
Helix 8
AA8
A
171 179Right-handed alpha
Helix 9
AA9
A
180 182Right-handed 310
Helix 10
AB1
A
197 205Right-handed alpha
Helix 11
AB2
A
205 221Right-handed alpha
Helix 12
AB3
A
222 229Right-handed alpha
Helix 13
AB4
A
232 251Right-handed alpha
Helix 14
AB5
A
254 275Right-handed alpha
Helix 15
AB6
A
278 287Right-handed alpha
Helix 16
AB7
A
307 316Right-handed alpha
Helix 17
AB8
A
318 323Right-handed alpha
Helix 18
AB9
A
324 337Right-handed alpha
Helix 19
AC1
A
339 343Right-handed 310
Helix 20
AC2
A
346 360Right-handed alpha
Helix 21
AC3
A
360 371Right-handed alpha
Helix 22
AC4
A
382 407Right-handed alpha
Helix 23
AC5
A
421 445Right-handed alpha
Helix 24
AC6
A
447 453Right-handed alpha
Helix 25
AC7
A
453 480Right-handed alpha
Helix 26
AC8
A
485 489Right-handed 310
Helix 27
AC9
A
493 512Right-handed alpha
Helix 28
AD1
A
513 520Right-handed 310
Helix 29
AD2
A
523 559Right-handed alpha
Helix 30
AD3
A
580 584Right-handed 310
Helix 31
AD4
A
586 596Right-handed alpha
Helix 32
AD5
A
605 610Right-handed 310
Helix 33
AD6
A
615 633Right-handed alpha
Helix 34
AD7
A
636 653Right-handed alpha
Helix 35
AD8
A
656 671Right-handed alpha
Helix 36
AD9
A
722 754Right-handed alpha
Helix 37
AE1
A
757 779Right-handed alpha
Helix 38
AE2
B
30 42Right-handed alpha
Helix 39
AE3
B
45 57Right-handed alpha
Helix 40
AE4
B
72 81Right-handed alpha
Helix 41
AE5
B
82 92Right-handed alpha
Helix 42
AE6
B
98 107Right-handed alpha
Helix 43
AE7
B
110 117Right-handed alpha
Helix 44
AE8
B
144 153Right-handed alpha
Helix 45
AE9
B
154 165Right-handed alpha
Helix 46
AF1
B
178 188Right-handed alpha
Helix 47
AF2
B
188 204Right-handed alpha
Helix 48
AF3
B
205 213Right-handed alpha
Helix 49
AF4
B
215 234Right-handed alpha
Helix 50
AF5
B
237 258Right-handed alpha
Helix 51
AF6
B
261 270Right-handed alpha
Helix 52
AF7
B
286 295Right-handed alpha
Helix 53
AF8
B
297 302Right-handed alpha
Helix 54
AF9
B
303 315Right-handed alpha
Helix 55
AG1
B
325 339Right-handed alpha
Helix 56
AG2
B
339 346Right-handed alpha
Helix 57
AG3
B
356 360Right-handed 310
Helix 58
AG4
B
361 385Right-handed alpha
Helix 59
AG5
B
399 404Right-handed alpha
Helix 60
AG6
B
405 423Right-handed alpha
Helix 61
AG7
B
426 432Right-handed alpha
Helix 62
AG8
B
432 458Right-handed alpha
Helix 63
AG9
B
472 491Right-handed alpha
Helix 64
AH1
B
492 498Right-handed 310
Helix 65
AH2
B
502 539Right-handed alpha
Helix 66
AH3
B
563 574Right-handed alpha
Helix 67
AH4
B
580 585Right-handed 310
Helix 68
AH5
B
590 610Right-handed alpha
Helix 69
AH6
B
611 630Right-handed alpha
Helix 70
AH7
B
631 646Right-handed alpha
Helix 71
AH8
B
696 726Right-handed alpha
Helix 72
AH9
B
731 754Right-handed alpha
Helix 73
AI1
C
30 43Right-handed alpha
Helix 74
AI2
C
44 58Right-handed alpha
Helix 75
AI3
C
72 80Right-handed alpha
Helix 76
AI4
C
83 92Right-handed alpha
Helix 77
AI5
C
98 106Right-handed alpha
Helix 78
AI6
C
110 117Right-handed alpha
Helix 79
AI7
C
144 153Right-handed alpha
Helix 80
AI8
C
154 165Right-handed alpha
Helix 81
AI9
C
178 188Right-handed alpha
Helix 82
AJ1
C
188 204Right-handed alpha
Helix 83
AJ2
C
205 213Right-handed alpha
Helix 84
AJ3
C
215 234Right-handed alpha
Helix 85
AJ4
C
237 258Right-handed alpha
Helix 86
AJ5
C
261 270Right-handed alpha
Helix 87
AJ6
C
286 295Right-handed alpha
Helix 88
AJ7
C
297 302Right-handed alpha
Helix 89
AJ8
C
303 315Right-handed alpha
Helix 90
AJ9
C
325 339Right-handed alpha
Helix 91
AK1
C
339 350Right-handed alpha
Helix 92
AK2
C
353 359Right-handed alpha
Helix 93
AK3
C
361 386Right-handed alpha
Helix 94
AK4
C
402 423Right-handed alpha
Helix 95
AK5
C
426 432Right-handed alpha
Helix 96
AK6
C
432 458Right-handed alpha
Helix 97
AK7
C
464 468Right-handed 310
Helix 98
AK8
C
472 491Right-handed alpha
Helix 99
AK9
C
492 497Right-handed 310
Helix 100
AL1
C
501 539Right-handed alpha
Helix 101
AL2
C
563 574Right-handed alpha
Helix 102
AL3
C
580 585Right-handed 310
Helix 103
AL4
C
591 610Right-handed alpha
Helix 104
AL5
C
611 628Right-handed alpha
Helix 105
AL6
C
630 645Right-handed alpha
Helix 106
AL7
C
695 728Right-handed alpha
Helix 107
AL8
C
732 754Right-handed alpha
Helix 108
AL9
D
30 43Right-handed alpha
Helix 109
AM1
D
44 56Right-handed alpha
Helix 110
AM2
D
72 80Right-handed alpha
Helix 111
AM3
D
82 91Right-handed alpha
Helix 112
AM4
D
98 106Right-handed alpha
Helix 113
AM5
D
108 110Right-handed 310
Helix 114
AM6
D
111 117Right-handed alpha
Helix 115
AM7
D
144 153Right-handed alpha
Helix 116
AM8
D
154 165Right-handed alpha
Helix 117
AM9
D
178 188Right-handed alpha
Helix 118
AN1
D
188 204Right-handed alpha
Helix 119
AN2
D
205 213Right-handed alpha
Helix 120
AN3
D
215 234Right-handed alpha
Helix 121
AN4
D
237 258Right-handed alpha
Helix 122
AN5
D
261 270Right-handed alpha
Helix 123
AN6
D
286 295Right-handed alpha
Helix 124
AN7
D
297 302Right-handed alpha
Helix 125
AN8
D
303 315Right-handed alpha
Helix 126
AN9
D
325 339Right-handed alpha
Helix 127
AO1
D
339 350Right-handed alpha
Helix 128
AO2
D
361 386Right-handed alpha
Helix 129
AO3
D
405 423Right-handed alpha
Helix 130
AO4
D
424 432Right-handed alpha
Helix 131
AO5
D
432 458Right-handed alpha
Helix 132
AO6
D
464 468Right-handed 310
Helix 133
AO7
D
472 489Right-handed alpha
Helix 134
AO8
D
490 498Right-handed 310
Helix 135
AO9
D
502 539Right-handed alpha
Helix 136
AP1
D
540 542Right-handed 310
Helix 137
AP2
D
563 574Right-handed alpha
Helix 138
AP3
D
575 577Right-handed 310
Helix 139
AP4
D
580 584Right-handed 310
Helix 140
AP5
D
590 628Right-handed alpha
Helix 141
AP6
D
630 646Right-handed alpha
Helix 142
AP7
D
654 658Right-handed 310
Helix 143
AP8
D
696 726Right-handed alpha
Helix 144
AP9
D
732 754Right-handed alpha
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There are 3 sheets in PDB entry 8WPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
D
17 18anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
C
167 169anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 18first strand
Strand 2
D
168 169anti-parallel
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