Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WPU entry

There are 6 chains in PDB entry 8WPU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	TYR 20	VAL 872
A	TYR 20	SER 865
G	VAL 5	VAL 246
C	LEU 0	ASN 340
D	ALA 7	PHE 61
E	VAL 2	LEU 235

There are 74 helices in PDB entry 8WPU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	64	84	Right-handed alpha
Helix 2	AA2	B	103	115	Right-handed alpha
Helix 3	AA3	B	115	124	Right-handed alpha
Helix 4	AA4	B	146	158	Right-handed alpha
Helix 5	AA5	B	171	176	Right-handed 310
Helix 6	AA6	B	191	204	Right-handed alpha
Helix 7	AA7	B	218	233	Right-handed alpha
Helix 8	AA8	B	248	261	Right-handed alpha
Helix 9	AA9	B	272	287	Right-handed alpha
Helix 10	AB1	B	307	311	Right-handed 310
Helix 11	AB2	B	329	336	Right-handed alpha
Helix 12	AB3	B	347	357	Right-handed alpha
Helix 13	AB4	B	400	404	Right-handed 310
Helix 14	AB5	B	415	436	Right-handed alpha
Helix 15	AB6	B	451	455	Right-handed 310
Helix 16	AB7	B	456	466	Right-handed alpha
Helix 17	AB8	B	525	528	Right-handed 310
Helix 18	AB9	B	612	637	Right-handed alpha
Helix 19	AC1	B	642	646	Right-handed 310
Helix 20	AC2	B	647	665	Right-handed alpha
Helix 21	AC3	B	666	668	Right-handed 310
Helix 22	AC4	B	673	699	Right-handed alpha
Helix 23	AC5	B	723	746	Right-handed alpha
Helix 24	AC6	B	769	793	Right-handed alpha
Helix 25	AC7	B	802	826	Right-handed alpha
Helix 26	AC8	B	836	861	Right-handed alpha
Helix 27	AC9	B	862	868	Right-handed 310
Helix 28	AD1	A	64	84	Right-handed alpha
Helix 29	AD2	A	103	115	Right-handed alpha
Helix 30	AD3	A	115	124	Right-handed alpha
Helix 31	AD4	A	146	158	Right-handed alpha
Helix 32	AD5	A	171	176	Right-handed 310
Helix 33	AD6	A	189	204	Right-handed alpha
Helix 34	AD7	A	218	233	Right-handed alpha
Helix 35	AD8	A	248	262	Right-handed alpha
Helix 36	AD9	A	272	286	Right-handed alpha
Helix 37	AE1	A	307	309	Right-handed 310
Helix 38	AE2	A	310	315	Right-handed alpha
Helix 39	AE3	A	329	336	Right-handed alpha
Helix 40	AE4	A	347	357	Right-handed alpha
Helix 41	AE5	A	400	404	Right-handed 310
Helix 42	AE6	A	415	436	Right-handed alpha
Helix 43	AE7	A	444	448	Right-handed 310
Helix 44	AE8	A	451	455	Right-handed 310
Helix 45	AE9	A	456	466	Right-handed alpha
Helix 46	AF1	A	525	528	Right-handed 310
Helix 47	AF2	A	529	533	Right-handed 310
Helix 48	AF3	A	610	637	Right-handed alpha
Helix 49	AF4	A	640	646	Right-handed alpha
Helix 50	AF5	A	647	664	Right-handed alpha
Helix 51	AF6	A	665	668	Right-handed 310
Helix 52	AF7	A	674	679	Right-handed alpha
Helix 53	AF8	A	680	706	Right-handed alpha
Helix 54	AF9	A	722	744	Right-handed alpha
Helix 55	AG1	A	769	794	Right-handed alpha
Helix 56	AG2	A	798	802	Right-handed 310
Helix 57	AG3	A	803	821	Right-handed alpha
Helix 58	AG4	A	821	828	Right-handed alpha
Helix 59	AG5	A	831	862	Right-handed alpha
Helix 60	AG6	G	6	33	Right-handed alpha
Helix 61	AG7	G	42	50	Right-handed 310
Helix 62	AG8	G	117	130	Right-handed alpha
Helix 63	AG9	G	146	154	Right-handed alpha
Helix 64	AH1	G	159	163	Right-handed 310
Helix 65	AH2	G	184	202	Right-handed alpha
Helix 66	AH3	G	222	243	Right-handed alpha
Helix 67	AH4	C	1	6	Right-handed alpha
Helix 68	AH5	C	12	23	Right-handed alpha
Helix 69	AH6	C	29	34	Right-handed alpha
Helix 70	AH7	D	11	16	Right-handed alpha
Helix 71	AH8	D	18	23	Right-handed alpha
Helix 72	AH9	D	30	44	Right-handed alpha
Helix 73	AI1	E	28	32	Right-handed 310
Helix 74	AI2	E	61	65	Right-handed 310

There are 34 sheets in PDB entry 8WPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	93	99	anti-parallel
Strand 3	B	32	38	parallel
Strand 4	B	138	142	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	183	185	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	243	first strand
Strand 2	B	208	214	parallel
Strand 3	B	266	270	parallel
Strand 4	B	292	295	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	322	first strand
Strand 2	B	489	496	anti-parallel
Strand 3	B	503	511	anti-parallel
Strand 4	B	521	523	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	470	first strand
Strand 2	B	476	477	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	554	first strand
Strand 2	B	563	567	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	573	first strand
Strand 2	B	583	584	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	591	first strand
Strand 2	B	598	599	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	602	604	first strand
Strand 2	B	760	763	parallel
Strand 3	B	752	753	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	93	99	anti-parallel
Strand 3	A	32	38	parallel
Strand 4	A	138	142	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	183	185	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	243	first strand
Strand 2	A	208	214	parallel
Strand 3	A	266	270	parallel
Strand 4	A	292	295	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	322	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	521	523	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	470	first strand
Strand 2	A	476	478	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	554	first strand
Strand 2	A	563	567	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	573	first strand
Strand 2	A	583	584	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	591	first strand
Strand 2	A	598	600	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	753	first strand
Strand 2	A	762	766	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	76	first strand
Strand 2	G	79	85	anti-parallel
Strand 3	G	34	40	parallel
Strand 4	G	105	111	parallel
Strand 5	G	138	144	parallel
Strand 6	G	212	213	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	134	139	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	157	161	anti-parallel
Strand 3	C	165	169	anti-parallel
Strand 4	C	176	181	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	198	202	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	218	222	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	249	254	anti-parallel
Strand 4	C	259	262	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	303	306	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	317	first strand
Strand 2	C	330	331	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	69	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	72	73	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	50	first strand
Strand 2	E	33	39	anti-parallel
Strand 3	E	97	99	anti-parallel
Strand 4	E	110	111	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	115	117	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	136	first strand
Strand 2	E	232	234	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	148	first strand
Strand 2	E	199	205	anti-parallel
Strand 3	E	195	196	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	178	first strand
Strand 2	E	163	166	anti-parallel
Strand 3	E	216	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WPU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WPU