Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WQ0 entry

There are 3 chains in PDB entry 8WQ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 19	GLU 1127
B	LYS 19	GLU 1127
C	LYS 19	GLU 1127

There are 68 helices in PDB entry 8WQ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	282	292	Right-handed alpha
Helix 2	AA2	A	325	331	Right-handed alpha
Helix 3	AA3	A	352	357	Right-handed 310
Helix 4	AA4	A	374	377	Right-handed 310
Helix 5	AA5	A	393	398	Right-handed 310
Helix 6	AA6	A	404	410	Right-handed alpha
Helix 7	AA7	A	426	431	Right-handed alpha
Helix 8	AA8	A	489	492	Right-handed 310
Helix 9	AA9	A	720	726	Right-handed alpha
Helix 10	AB1	A	729	739	Right-handed alpha
Helix 11	AB2	A	743	766	Right-handed alpha
Helix 12	AB3	A	799	809	Right-handed alpha
Helix 13	AB4	A	819	826	Right-handed alpha
Helix 14	AB5	A	831	838	Right-handed alpha
Helix 15	AB6	A	849	867	Right-handed alpha
Helix 16	AB7	A	869	873	Right-handed 310
Helix 17	AB8	A	880	892	Right-handed alpha
Helix 18	AB9	A	895	902	Right-handed alpha
Helix 19	AC1	A	902	923	Right-handed alpha
Helix 20	AC2	A	928	949	Right-handed alpha
Helix 21	AC3	A	959	967	Right-handed alpha
Helix 22	AC4	A	968	1016	Right-handed alpha
Helix 23	AC5	B	282	292	Right-handed alpha
Helix 24	AC6	B	325	331	Right-handed alpha
Helix 25	AC7	B	352	357	Right-handed 310
Helix 26	AC8	B	374	377	Right-handed 310
Helix 27	AC9	B	393	398	Right-handed 310
Helix 28	AD1	B	404	410	Right-handed alpha
Helix 29	AD2	B	426	431	Right-handed alpha
Helix 30	AD3	B	489	492	Right-handed 310
Helix 31	AD4	B	720	726	Right-handed alpha
Helix 32	AD5	B	729	739	Right-handed alpha
Helix 33	AD6	B	742	766	Right-handed alpha
Helix 34	AD7	B	799	809	Right-handed alpha
Helix 35	AD8	B	819	826	Right-handed alpha
Helix 36	AD9	B	831	838	Right-handed alpha
Helix 37	AE1	B	849	868	Right-handed alpha
Helix 38	AE2	B	869	873	Right-handed 310
Helix 39	AE3	B	880	892	Right-handed alpha
Helix 40	AE4	B	895	902	Right-handed alpha
Helix 41	AE5	B	902	923	Right-handed alpha
Helix 42	AE6	B	928	948	Right-handed alpha
Helix 43	AE7	B	949	951	Right-handed 310
Helix 44	AE8	B	959	965	Right-handed alpha
Helix 45	AE9	B	968	1015	Right-handed alpha
Helix 46	AF1	C	282	292	Right-handed alpha
Helix 47	AF2	C	325	331	Right-handed alpha
Helix 48	AF3	C	352	357	Right-handed 310
Helix 49	AF4	C	374	377	Right-handed 310
Helix 50	AF5	C	393	398	Right-handed 310
Helix 51	AF6	C	404	410	Right-handed alpha
Helix 52	AF7	C	426	431	Right-handed alpha
Helix 53	AF8	C	489	492	Right-handed 310
Helix 54	AF9	C	720	726	Right-handed alpha
Helix 55	AG1	C	729	739	Right-handed alpha
Helix 56	AG2	C	742	766	Right-handed alpha
Helix 57	AG3	C	799	809	Right-handed alpha
Helix 58	AG4	C	819	826	Right-handed alpha
Helix 59	AG5	C	831	838	Right-handed alpha
Helix 60	AG6	C	849	868	Right-handed alpha
Helix 61	AG7	C	869	873	Right-handed 310
Helix 62	AG8	C	880	892	Right-handed alpha
Helix 63	AG9	C	895	902	Right-handed alpha
Helix 64	AH1	C	902	923	Right-handed alpha
Helix 65	AH2	C	928	948	Right-handed alpha
Helix 66	AH3	C	949	951	Right-handed 310
Helix 67	AH4	C	959	965	Right-handed alpha
Helix 68	AH5	C	968	1015	Right-handed alpha

There are 49 sheets in PDB entry 8WQ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	66	73	anti-parallel
Strand 3	A	251	257	anti-parallel
Strand 4	A	87	94	anti-parallel
Strand 5	A	182	191	anti-parallel
Strand 6	A	194	203	anti-parallel
Strand 7	A	216	224	anti-parallel
Strand 8	A	41	42	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	66	73	anti-parallel
Strand 3	A	76	77	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	60	first strand
Strand 2	A	259	267	anti-parallel
Strand 3	A	273	278	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	231	238	anti-parallel
Strand 3	A	138	141	parallel
Strand 4	A	148	149	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	231	238	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	114	116	anti-parallel
Strand 5	A	125	133	anti-parallel
Strand 6	A	154	165	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	302	first strand
Strand 2	A	582	586	anti-parallel
Strand 3	A	596	599	anti-parallel
Strand 4	A	636	638	anti-parallel
Strand 5	A	630	631	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	316	first strand
Strand 2	A	525	530	parallel
Strand 3	A	533	541	anti-parallel
Strand 4	A	571	575	anti-parallel
Strand 5	A	560	564	anti-parallel
Strand 6	A	552	554	anti-parallel
Strand 7	B	47	48	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	379	391	anti-parallel
Strand 3	A	511	512	anti-parallel
Strand 4	A	349	350	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	379	391	anti-parallel
Strand 3	A	494	504	anti-parallel
Strand 4	A	419	425	anti-parallel
Strand 5	A	364	368	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	479	481	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	642	first strand
Strand 2	A	672	679	parallel
Strand 3	A	657	664	anti-parallel
Strand 4	A	651	654	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	686	first strand
Strand 2	B	770	772	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	711	first strand
Strand 2	A	1042	1061	anti-parallel
Strand 3	A	1030	1039	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	711	first strand
Strand 2	A	1042	1061	anti-parallel
Strand 3	A	1077	1080	anti-parallel
Strand 4	A	1085	1088	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	719	first strand
Strand 2	A	841	844	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	772	first strand
Strand 2	C	684	686	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	780	first strand
Strand 2	A	783	784	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1103	1108	first strand
Strand 2	A	1069	1073	anti-parallel
Strand 3	A	1064	1065	anti-parallel
Strand 4	A	1116	1117	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	66	72	anti-parallel
Strand 3	B	251	257	anti-parallel
Strand 4	B	87	94	anti-parallel
Strand 5	B	182	191	anti-parallel
Strand 6	B	194	203	anti-parallel
Strand 7	B	216	224	anti-parallel
Strand 8	B	41	42	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	60	first strand
Strand 2	B	259	267	anti-parallel
Strand 3	B	273	278	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	231	238	anti-parallel
Strand 3	B	138	141	parallel
Strand 4	B	148	149	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	231	238	anti-parallel
Strand 3	B	99	105	anti-parallel
Strand 4	B	114	116	anti-parallel
Strand 5	B	125	133	anti-parallel
Strand 6	B	154	165	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	302	first strand
Strand 2	B	582	586	anti-parallel
Strand 3	B	596	599	anti-parallel
Strand 4	B	636	638	anti-parallel
Strand 5	B	630	631	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	316	first strand
Strand 2	B	525	530	parallel
Strand 3	B	533	541	anti-parallel
Strand 4	B	571	575	anti-parallel
Strand 5	B	560	564	anti-parallel
Strand 6	B	552	554	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	379	391	anti-parallel
Strand 3	B	511	512	anti-parallel
Strand 4	B	349	350	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	379	391	anti-parallel
Strand 3	B	494	504	anti-parallel
Strand 4	B	419	425	anti-parallel
Strand 5	B	364	368	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	479	481	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	672	679	parallel
Strand 3	B	657	664	anti-parallel
Strand 4	B	651	654	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	686	first strand
Strand 2	C	770	772	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	694	711	first strand
Strand 2	B	1042	1061	anti-parallel
Strand 3	B	1030	1039	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	694	711	first strand
Strand 2	B	1042	1061	anti-parallel
Strand 3	B	1077	1079	anti-parallel
Strand 4	B	1086	1088	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	719	first strand
Strand 2	B	841	844	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	780	first strand
Strand 2	B	783	784	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1103	1105	first strand
Strand 2	B	1070	1073	anti-parallel
Strand 3	B	1064	1065	anti-parallel
Strand 4	B	1116	1117	parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	C	251	257	anti-parallel
Strand 4	C	87	94	anti-parallel
Strand 5	C	182	191	anti-parallel
Strand 6	C	194	203	anti-parallel
Strand 7	C	216	223	anti-parallel
Strand 8	C	41	42	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	60	first strand
Strand 2	C	259	267	anti-parallel
Strand 3	C	273	278	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	231	238	anti-parallel
Strand 3	C	138	141	parallel
Strand 4	C	148	149	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	231	238	anti-parallel
Strand 3	C	99	105	anti-parallel
Strand 4	C	113	116	anti-parallel
Strand 5	C	125	133	anti-parallel
Strand 6	C	154	165	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	302	first strand
Strand 2	C	582	586	anti-parallel
Strand 3	C	596	599	anti-parallel
Strand 4	C	636	638	anti-parallel
Strand 5	C	630	631	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	316	first strand
Strand 2	C	525	530	parallel
Strand 3	C	533	541	anti-parallel
Strand 4	C	571	575	anti-parallel
Strand 5	C	560	564	anti-parallel
Strand 6	C	552	554	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	379	391	anti-parallel
Strand 3	C	511	512	anti-parallel
Strand 4	C	349	350	parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	379	391	anti-parallel
Strand 3	C	494	504	anti-parallel
Strand 4	C	419	425	anti-parallel
Strand 5	C	364	368	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	442	first strand
Strand 2	C	479	481	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	642	first strand
Strand 2	C	672	679	parallel
Strand 3	C	657	664	anti-parallel
Strand 4	C	651	654	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	711	first strand
Strand 2	C	1042	1061	anti-parallel
Strand 3	C	1030	1039	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	711	first strand
Strand 2	C	1042	1061	anti-parallel
Strand 3	C	1077	1080	anti-parallel
Strand 4	C	1085	1088	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	719	first strand
Strand 2	C	841	844	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	779	780	first strand
Strand 2	C	783	784	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1103	1105	first strand
Strand 2	C	1070	1073	anti-parallel
Strand 3	C	1064	1065	anti-parallel
Strand 4	C	1116	1117	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WQ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQ0