Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WQ3 entry

There are 4 chains in PDB entry 8WQ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 369ARG 466
B
 MET 369ARG 466
C
 MET 369ARG 466
D
 MET 369GLU 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8WQ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
404 413Right-handed alpha
Helix 2
AA2
A
414 416Right-handed 310
Helix 3
AA3
A
436 448Right-handed alpha
Helix 4
AA4
B
404 414Right-handed alpha
Helix 5
AA5
B
425 427Right-handed 310
Helix 6
AA6
B
436 448Right-handed alpha
Helix 7
AA7
C
404 413Right-handed alpha
Helix 8
AA8
C
414 416Right-handed 310
Helix 9
AA9
C
436 448Right-handed alpha
Helix 10
AB1
D
404 414Right-handed alpha
Helix 11
AB2
D
436 448Right-handed alpha
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There are 5 sheets in PDB entry 8WQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 423first strand
Strand 2
A
429 434anti-parallel
Strand 3
A
392 399anti-parallel
Strand 4
A
455 461anti-parallel
Strand 5
A
451 452anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
C
370 373anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 423first strand
Strand 2
B
429 434anti-parallel
Strand 3
B
392 399anti-parallel
Strand 4
B
455 461anti-parallel
Strand 5
B
451 452anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
418 423first strand
Strand 2
C
429 434anti-parallel
Strand 3
C
392 399anti-parallel
Strand 4
C
455 461anti-parallel
Strand 5
C
451 452anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
418 423first strand
Strand 2
D
429 434anti-parallel
Strand 3
D
392 399anti-parallel
Strand 4
D
455 461anti-parallel
Strand 5
D
451 452anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il