Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WQ5 entry

There are 8 chains in PDB entry 8WQ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 369	GLU 467
B	MET 369	GLU 467
C	MET 369	GLU 467
D	MET 369	GLU 467
E	G 1	A 6
F	G 1	A 6
G	G 1	A 6
H	G 1	A 6

There are 8 helices in PDB entry 8WQ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	404	414	Right-handed alpha
Helix 2	AA2	A	436	448	Right-handed alpha
Helix 3	AA3	B	404	414	Right-handed alpha
Helix 4	AA4	B	436	448	Right-handed alpha
Helix 5	AA5	C	404	414	Right-handed alpha
Helix 6	AA6	C	436	448	Right-handed alpha
Helix 7	AA7	D	404	414	Right-handed alpha
Helix 8	AA8	D	436	448	Right-handed alpha

There are 4 sheets in PDB entry 8WQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	423	first strand
Strand 2	A	429	434	anti-parallel
Strand 3	A	392	399	anti-parallel
Strand 4	A	455	461	anti-parallel
Strand 5	A	451	452	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	424	first strand
Strand 2	B	429	434	anti-parallel
Strand 3	B	392	399	anti-parallel
Strand 4	B	455	461	anti-parallel
Strand 5	B	451	452	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	424	first strand
Strand 2	C	429	434	anti-parallel
Strand 3	C	392	399	anti-parallel
Strand 4	C	455	461	anti-parallel
Strand 5	C	451	452	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	423	first strand
Strand 2	D	429	434	anti-parallel
Strand 3	D	392	399	anti-parallel
Strand 4	D	455	461	anti-parallel
Strand 5	D	451	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WQ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQ5