Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WQA entry

There are 9 chains in PDB entry 8WQA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 1	VAL 744
D	MET 1	HIS 627
E	MET 17	CYS 112
F	ASP 2	PRO 100
J	PHE 22	GLN 104
G	MET 17	CYS 112
H	ASP 2	PRO 100
I	PHE 22	GLN 104
A	THR 1	THR 1

There are157 helices in PDB entry 8WQA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	9	26	Right-handed alpha
Helix 2	AA2	C	31	46	Right-handed alpha
Helix 3	AA3	C	53	78	Right-handed alpha
Helix 4	AA4	C	82	105	Right-handed alpha
Helix 5	AA5	C	105	112	Right-handed alpha
Helix 6	AA6	C	138	151	Right-handed alpha
Helix 7	AA7	C	155	173	Right-handed alpha
Helix 8	AA8	C	177	191	Right-handed alpha
Helix 9	AA9	C	192	195	Right-handed 310
Helix 10	AB1	C	200	207	Right-handed alpha
Helix 11	AB2	C	207	228	Right-handed alpha
Helix 12	AB3	C	231	252	Right-handed alpha
Helix 13	AB4	C	255	260	Right-handed 310
Helix 14	AB5	C	261	271	Right-handed alpha
Helix 15	AB6	C	274	289	Right-handed alpha
Helix 16	AB7	C	290	302	Right-handed alpha
Helix 17	AB8	C	307	328	Right-handed alpha
Helix 18	AB9	C	334	357	Right-handed alpha
Helix 19	AC1	C	361	377	Right-handed alpha
Helix 20	AC2	C	386	400	Right-handed alpha
Helix 21	AC3	C	407	423	Right-handed alpha
Helix 22	AC4	C	427	445	Right-handed alpha
Helix 23	AC5	C	450	470	Right-handed alpha
Helix 24	AC6	C	471	494	Right-handed alpha
Helix 25	AC7	C	530	548	Right-handed alpha
Helix 26	AC8	C	581	591	Right-handed alpha
Helix 27	AC9	C	596	598	Right-handed 310
Helix 28	AD1	C	599	604	Right-handed alpha
Helix 29	AD2	C	606	619	Right-handed alpha
Helix 30	AD3	C	654	659	Right-handed alpha
Helix 31	AD4	C	661	692	Right-handed alpha
Helix 32	AD5	C	696	707	Right-handed alpha
Helix 33	AD6	C	714	728	Right-handed alpha
Helix 34	AD7	D	2	15	Right-handed alpha
Helix 35	AD8	D	16	24	Right-handed alpha
Helix 36	AD9	D	28	36	Right-handed alpha
Helix 37	AE1	D	48	57	Right-handed alpha
Helix 38	AE2	D	58	68	Right-handed alpha
Helix 39	AE3	D	90	99	Right-handed alpha
Helix 40	AE4	D	100	110	Right-handed alpha
Helix 41	AE5	D	123	131	Right-handed alpha
Helix 42	AE6	D	133	142	Right-handed alpha
Helix 43	AE7	D	156	164	Right-handed alpha
Helix 44	AE8	D	167	175	Right-handed alpha
Helix 45	AE9	D	189	198	Right-handed alpha
Helix 46	AF1	D	199	209	Right-handed alpha
Helix 47	AF2	D	221	229	Right-handed alpha
Helix 48	AF3	D	233	241	Right-handed alpha
Helix 49	AF4	D	245	252	Right-handed alpha
Helix 50	AF5	D	254	262	Right-handed alpha
Helix 51	AF6	D	269	284	Right-handed alpha
Helix 52	AF7	D	310	317	Right-handed alpha
Helix 53	AF8	D	320	337	Right-handed alpha
Helix 54	AF9	D	340	342	Right-handed 310
Helix 55	AG1	D	343	356	Right-handed alpha
Helix 56	AG2	D	360	378	Right-handed alpha
Helix 57	AG3	D	381	398	Right-handed alpha
Helix 58	AG4	D	403	427	Right-handed alpha
Helix 59	AG5	D	432	457	Right-handed alpha
Helix 60	AG6	D	460	477	Right-handed alpha
Helix 61	AG7	D	486	492	Right-handed alpha
Helix 62	AG8	D	501	506	Right-handed 310
Helix 63	AG9	D	511	521	Right-handed alpha
Helix 64	AH1	D	534	540	Right-handed alpha
Helix 65	AH2	D	548	562	Right-handed alpha
Helix 66	AH3	D	582	592	Right-handed alpha
Helix 67	AH4	D	596	608	Right-handed alpha
Helix 68	AH5	D	617	627	Right-handed alpha
Helix 69	AH6	E	33	37	Right-handed alpha
Helix 70	AH7	E	39	47	Right-handed alpha
Helix 71	AH8	E	66	84	Right-handed alpha
Helix 72	AH9	E	102	110	Right-handed alpha
Helix 73	AI1	F	23	36	Right-handed alpha
Helix 74	AI2	F	56	61	Right-handed alpha
Helix 75	AI3	J	80	88	Right-handed alpha
Helix 76	AI4	G	33	37	Right-handed alpha
Helix 77	AI5	G	39	47	Right-handed alpha
Helix 78	AI6	G	66	83	Right-handed alpha
Helix 79	AI7	G	102	110	Right-handed alpha
Helix 80	AI8	H	23	36	Right-handed alpha
Helix 81	AI9	H	38	40	Right-handed 310
Helix 82	AJ1	H	56	61	Right-handed alpha
Helix 83	AJ2	I	53	58	Right-handed alpha
Helix 84	AJ3	I	81	91	Right-handed alpha
Helix 85	AJ4	A	9	26	Right-handed alpha
Helix 86	AJ5	A	31	47	Right-handed alpha
Helix 87	AJ6	A	53	79	Right-handed alpha
Helix 88	AJ7	A	82	105	Right-handed alpha
Helix 89	AJ8	A	105	112	Right-handed alpha
Helix 90	AJ9	A	138	151	Right-handed alpha
Helix 91	AK1	A	155	172	Right-handed alpha
Helix 92	AK2	A	177	191	Right-handed alpha
Helix 93	AK3	A	192	195	Right-handed 310
Helix 94	AK4	A	200	207	Right-handed alpha
Helix 95	AK5	A	207	228	Right-handed alpha
Helix 96	AK6	A	231	252	Right-handed alpha
Helix 97	AK7	A	255	257	Right-handed 310
Helix 98	AK8	A	258	269	Right-handed alpha
Helix 99	AK9	A	274	288	Right-handed alpha
Helix 100	AL1	A	290	302	Right-handed alpha
Helix 101	AL2	A	307	328	Right-handed alpha
Helix 102	AL3	A	334	357	Right-handed alpha
Helix 103	AL4	A	361	377	Right-handed alpha
Helix 104	AL5	A	386	400	Right-handed alpha
Helix 105	AL6	A	407	423	Right-handed alpha
Helix 106	AL7	A	427	445	Right-handed alpha
Helix 107	AL8	A	450	470	Right-handed alpha
Helix 108	AL9	A	471	494	Right-handed alpha
Helix 109	AM1	A	530	547	Right-handed alpha
Helix 110	AM2	A	566	570	Right-handed 310
Helix 111	AM3	A	581	591	Right-handed alpha
Helix 112	AM4	A	595	604	Right-handed alpha
Helix 113	AM5	A	606	619	Right-handed alpha
Helix 114	AM6	A	655	659	Right-handed 310
Helix 115	AM7	A	661	692	Right-handed alpha
Helix 116	AM8	A	696	708	Right-handed alpha
Helix 117	AM9	A	714	728	Right-handed alpha
Helix 118	AN1	B	2	15	Right-handed alpha
Helix 119	AN2	B	16	25	Right-handed alpha
Helix 120	AN3	B	28	36	Right-handed alpha
Helix 121	AN4	B	48	56	Right-handed alpha
Helix 122	AN5	B	58	68	Right-handed alpha
Helix 123	AN6	B	90	98	Right-handed alpha
Helix 124	AN7	B	100	111	Right-handed alpha
Helix 125	AN8	B	123	132	Right-handed alpha
Helix 126	AN9	B	133	142	Right-handed alpha
Helix 127	AO1	B	156	164	Right-handed alpha
Helix 128	AO2	B	166	176	Right-handed alpha
Helix 129	AO3	B	189	197	Right-handed alpha
Helix 130	AO4	B	199	209	Right-handed alpha
Helix 131	AO5	B	221	229	Right-handed alpha
Helix 132	AO6	B	231	236	Right-handed alpha
Helix 133	AO7	B	237	242	Right-handed 310
Helix 134	AO8	B	246	262	Right-handed alpha
Helix 135	AO9	B	269	284	Right-handed alpha
Helix 136	AP1	B	299	303	Right-handed 310
Helix 137	AP2	B	310	317	Right-handed alpha
Helix 138	AP3	B	320	337	Right-handed alpha
Helix 139	AP4	B	340	342	Right-handed 310
Helix 140	AP5	B	343	357	Right-handed alpha
Helix 141	AP6	B	359	377	Right-handed alpha
Helix 142	AP7	B	381	398	Right-handed alpha
Helix 143	AP8	B	403	426	Right-handed alpha
Helix 144	AP9	B	432	457	Right-handed alpha
Helix 145	AQ1	B	460	478	Right-handed alpha
Helix 146	AQ2	B	486	493	Right-handed alpha
Helix 147	AQ3	B	502	506	Right-handed 310
Helix 148	AQ4	B	511	521	Right-handed alpha
Helix 149	AQ5	B	534	540	Right-handed alpha
Helix 150	AQ6	B	548	562	Right-handed alpha
Helix 151	AQ7	B	575	580	Right-handed alpha
Helix 152	AQ8	B	582	593	Right-handed alpha
Helix 153	AQ9	B	596	609	Right-handed alpha
Helix 154	AR1	B	617	626	Right-handed alpha
Helix 155	AR2	K	-22	-17	Right-handed alpha
Helix 156	AR3	K	-14	-5	Right-handed alpha
Helix 157	AR4	L	-13	-3	Right-handed alpha

There are 16 sheets in PDB entry 8WQA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	507	first strand
Strand 2	J	23	27	parallel
Strand 3	C	561	565	anti-parallel
Strand 4	C	574	578	anti-parallel
Strand 5	C	650	652	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	510	513	first strand
Strand 2	J	30	35	parallel
Strand 3	C	551	555	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	594	first strand
Strand 2	C	638	640	anti-parallel
Strand 3	C	623	625	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	693	695	first strand
Strand 2	C	740	743	anti-parallel
Strand 3	C	731	733	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	45	46	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	85	89	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	18	22	parallel
Strand 3	E	29	32	anti-parallel
Strand 4	F	13	18	parallel
Strand 5	F	3	8	anti-parallel
Strand 6	F	73	76	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	41	42	first strand
Strand 2	J	47	48	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	32	first strand
Strand 2	G	18	22	anti-parallel
Strand 3	G	59	61	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	18	first strand
Strand 2	H	3	8	anti-parallel
Strand 3	H	73	79	parallel
Strand 4	H	42	45	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	507	first strand
Strand 2	I	23	27	parallel
Strand 3	A	561	565	anti-parallel
Strand 4	A	574	578	anti-parallel
Strand 5	A	650	652	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	513	first strand
Strand 2	I	30	35	parallel
Strand 3	A	551	555	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	71	first strand
Strand 2	I	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	594	first strand
Strand 2	A	638	640	anti-parallel
Strand 3	A	623	625	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	695	first strand
Strand 2	A	740	743	anti-parallel
Strand 3	A	731	733	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	45	47	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WQA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQA