Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WQC entry

There are 6 chains in PDB entry 8WQC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASP 2	PRO 97
F	ARG 21	LYS 105
B	MET 17	CYS 112
C	THR 1	ALA 745
J	PHE 22	LYS 105
E	THR 1	LEU 163

There are153 helices in PDB entry 8WQC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	23	36	Right-handed alpha
Helix 2	AA2	D	38	40	Right-handed 310
Helix 3	AA3	F	59	64	Right-handed alpha
Helix 4	AA4	F	81	88	Right-handed alpha
Helix 5	AA5	B	33	37	Right-handed alpha
Helix 6	AA6	B	40	46	Right-handed alpha
Helix 7	AA7	B	66	84	Right-handed alpha
Helix 8	AA8	B	99	110	Right-handed alpha
Helix 9	AA9	C	9	25	Right-handed alpha
Helix 10	AB1	C	31	47	Right-handed alpha
Helix 11	AB2	C	53	79	Right-handed alpha
Helix 12	AB3	C	82	88	Right-handed alpha
Helix 13	AB4	C	91	105	Right-handed alpha
Helix 14	AB5	C	105	112	Right-handed alpha
Helix 15	AB6	C	138	150	Right-handed alpha
Helix 16	AB7	C	156	173	Right-handed alpha
Helix 17	AB8	C	177	186	Right-handed alpha
Helix 18	AB9	C	190	195	Right-handed 310
Helix 19	AC1	C	202	207	Right-handed alpha
Helix 20	AC2	C	207	230	Right-handed alpha
Helix 21	AC3	C	231	252	Right-handed alpha
Helix 22	AC4	C	255	260	Right-handed 310
Helix 23	AC5	C	262	271	Right-handed alpha
Helix 24	AC6	C	274	288	Right-handed alpha
Helix 25	AC7	C	290	303	Right-handed alpha
Helix 26	AC8	C	307	327	Right-handed alpha
Helix 27	AC9	C	334	358	Right-handed alpha
Helix 28	AD1	C	361	377	Right-handed alpha
Helix 29	AD2	C	386	400	Right-handed alpha
Helix 30	AD3	C	407	423	Right-handed alpha
Helix 31	AD4	C	427	445	Right-handed alpha
Helix 32	AD5	C	450	466	Right-handed alpha
Helix 33	AD6	C	468	471	Right-handed 310
Helix 34	AD7	C	472	489	Right-handed alpha
Helix 35	AD8	C	490	496	Right-handed alpha
Helix 36	AD9	C	533	547	Right-handed alpha
Helix 37	AE1	C	579	584	Right-handed alpha
Helix 38	AE2	C	595	603	Right-handed alpha
Helix 39	AE3	C	606	620	Right-handed alpha
Helix 40	AE4	C	664	692	Right-handed alpha
Helix 41	AE5	C	695	707	Right-handed alpha
Helix 42	AE6	C	714	723	Right-handed alpha
Helix 43	AE7	C	723	728	Right-handed alpha
Helix 44	AE8	J	53	58	Right-handed alpha
Helix 45	AE9	J	80	91	Right-handed alpha
Helix 46	AF1	E	9	26	Right-handed alpha
Helix 47	AF2	E	31	48	Right-handed alpha
Helix 48	AF3	E	53	79	Right-handed alpha
Helix 49	AF4	E	83	105	Right-handed alpha
Helix 50	AF5	E	105	110	Right-handed alpha
Helix 51	AF6	E	111	116	Right-handed alpha
Helix 52	AF7	E	138	149	Right-handed alpha
Helix 53	AF8	E	157	172	Right-handed alpha
Helix 54	AF9	E	177	187	Right-handed alpha
Helix 55	AG1	E	188	189	Right-handed 310
Helix 56	AG2	E	190	194	Right-handed 310
Helix 57	AG3	E	207	230	Right-handed alpha
Helix 58	AG4	E	231	254	Right-handed alpha
Helix 59	AG5	E	255	259	Right-handed 310
Helix 60	AG6	E	260	271	Right-handed alpha
Helix 61	AG7	E	274	288	Right-handed alpha
Helix 62	AG8	E	290	304	Right-handed alpha
Helix 63	AG9	E	306	327	Right-handed alpha
Helix 64	AH1	E	334	357	Right-handed alpha
Helix 65	AH2	E	361	377	Right-handed alpha
Helix 66	AH3	E	386	400	Right-handed alpha
Helix 67	AH4	E	407	423	Right-handed alpha
Helix 68	AH5	E	427	436	Right-handed alpha
Helix 69	AH6	E	439	445	Right-handed alpha
Helix 70	AH7	E	452	463	Right-handed alpha
Helix 71	AH8	E	471	495	Right-handed alpha
Helix 72	AH9	E	533	547	Right-handed alpha
Helix 73	AI1	E	579	584	Right-handed alpha
Helix 74	AI2	E	586	591	Right-handed alpha
Helix 75	AI3	E	597	602	Right-handed 310
Helix 76	AI4	E	606	621	Right-handed alpha
Helix 77	AI5	E	664	689	Right-handed alpha
Helix 78	AI6	E	697	707	Right-handed alpha
Helix 79	AI7	E	714	728	Right-handed alpha
Helix 80	AI8	N	22	35	Right-handed alpha
Helix 81	AI9	N	37	41	Right-handed 310
Helix 82	AJ1	N	55	60	Right-handed 310
Helix 83	AJ2	H	33	37	Right-handed alpha
Helix 84	AJ3	H	39	46	Right-handed alpha
Helix 85	AJ4	H	66	84	Right-handed alpha
Helix 86	AJ5	I	23	36	Right-handed alpha
Helix 87	AJ6	I	38	40	Right-handed 310
Helix 88	AJ7	K	22	31	Right-handed alpha
Helix 89	AJ8	A	2	15	Right-handed alpha
Helix 90	AJ9	A	17	25	Right-handed alpha
Helix 91	AK1	A	28	36	Right-handed alpha
Helix 92	AK2	A	48	56	Right-handed alpha
Helix 93	AK3	A	58	68	Right-handed alpha
Helix 94	AK4	A	90	98	Right-handed alpha
Helix 95	AK5	A	100	111	Right-handed alpha
Helix 96	AK6	A	123	132	Right-handed alpha
Helix 97	AK7	A	133	143	Right-handed alpha
Helix 98	AK8	A	156	164	Right-handed alpha
Helix 99	AK9	A	166	176	Right-handed alpha
Helix 100	AL1	A	189	198	Right-handed alpha
Helix 101	AL2	A	199	209	Right-handed alpha
Helix 102	AL3	A	221	229	Right-handed alpha
Helix 103	AL4	A	231	236	Right-handed alpha
Helix 104	AL5	A	246	262	Right-handed alpha
Helix 105	AL6	A	268	284	Right-handed alpha
Helix 106	AL7	A	299	303	Right-handed 310
Helix 107	AL8	A	310	317	Right-handed alpha
Helix 108	AL9	A	320	337	Right-handed alpha
Helix 109	AM1	A	343	357	Right-handed alpha
Helix 110	AM2	A	359	376	Right-handed alpha
Helix 111	AM3	A	382	398	Right-handed alpha
Helix 112	AM4	A	403	428	Right-handed alpha
Helix 113	AM5	A	432	455	Right-handed alpha
Helix 114	AM6	A	460	477	Right-handed alpha
Helix 115	AM7	A	486	492	Right-handed alpha
Helix 116	AM8	A	511	521	Right-handed alpha
Helix 117	AM9	A	534	540	Right-handed alpha
Helix 118	AN1	A	549	560	Right-handed alpha
Helix 119	AN2	A	582	593	Right-handed alpha
Helix 120	AN3	A	596	607	Right-handed alpha
Helix 121	AN4	A	617	627	Right-handed alpha
Helix 122	AN5	G	2	15	Right-handed alpha
Helix 123	AN6	G	17	24	Right-handed alpha
Helix 124	AN7	G	28	36	Right-handed alpha
Helix 125	AN8	G	48	56	Right-handed alpha
Helix 126	AN9	G	58	68	Right-handed alpha
Helix 127	AO1	G	90	98	Right-handed alpha
Helix 128	AO2	G	100	111	Right-handed alpha
Helix 129	AO3	G	123	132	Right-handed alpha
Helix 130	AO4	G	133	143	Right-handed alpha
Helix 131	AO5	G	156	164	Right-handed alpha
Helix 132	AO6	G	166	176	Right-handed alpha
Helix 133	AO7	G	189	198	Right-handed alpha
Helix 134	AO8	G	199	209	Right-handed alpha
Helix 135	AO9	G	221	229	Right-handed alpha
Helix 136	AP1	G	231	236	Right-handed alpha
Helix 137	AP2	G	246	262	Right-handed alpha
Helix 138	AP3	G	268	284	Right-handed alpha
Helix 139	AP4	G	310	317	Right-handed alpha
Helix 140	AP5	G	320	337	Right-handed alpha
Helix 141	AP6	G	343	357	Right-handed alpha
Helix 142	AP7	G	359	377	Right-handed alpha
Helix 143	AP8	G	382	398	Right-handed alpha
Helix 144	AP9	G	403	428	Right-handed alpha
Helix 145	AQ1	G	432	455	Right-handed alpha
Helix 146	AQ2	G	460	477	Right-handed alpha
Helix 147	AQ3	G	486	492	Right-handed alpha
Helix 148	AQ4	G	511	521	Right-handed alpha
Helix 149	AQ5	G	534	540	Right-handed alpha
Helix 150	AQ6	G	549	560	Right-handed alpha
Helix 151	AQ7	G	582	593	Right-handed alpha
Helix 152	AQ8	G	596	609	Right-handed alpha
Helix 153	AQ9	G	617	627	Right-handed alpha

There are 17 sheets in PDB entry 8WQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	73	79	anti-parallel
Strand 3	D	3	9	parallel
Strand 4	D	12	18	anti-parallel
Strand 5	B	29	32	parallel
Strand 6	B	18	22	anti-parallel
Strand 7	B	60	61	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	49	50	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	27	first strand
Strand 2	E	562	564	anti-parallel
Strand 3	E	574	577	anti-parallel
Strand 4	E	650	651	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	510	513	first strand
Strand 2	F	30	35	parallel
Strand 3	E	551	553	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	72	first strand
Strand 2	F	78	80	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	513	first strand
Strand 2	J	28	35	parallel
Strand 3	C	551	555	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	652	first strand
Strand 2	C	574	578	parallel
Strand 3	C	561	565	anti-parallel
Strand 4	J	23	24	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	594	first strand
Strand 2	C	638	640	anti-parallel
Strand 3	C	623	625	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	594	595	first strand
Strand 2	E	637	640	anti-parallel
Strand 3	E	623	625	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	731	733	first strand
Strand 2	E	741	743	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	42	43	first strand
Strand 2	N	69	70	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	61	first strand
Strand 2	H	18	22	parallel
Strand 3	H	28	32	anti-parallel
Strand 4	I	13	18	parallel
Strand 5	I	3	7	anti-parallel
Strand 6	I	73	79	parallel
Strand 7	I	42	46	anti-parallel
Strand 8	I	49	51	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	45	first strand
Strand 2	K	48	49	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	45	47	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	85	89	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	42	first strand
Strand 2	G	45	47	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	80	first strand
Strand 2	G	85	89	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WQC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQC