Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WQD entry

There are 2 chains in PDB entry 8WQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1HIS 627
G
 LYS -22PRO -1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8WQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
1 14Right-handed alpha
Helix 2
AA2
D
16 24Right-handed alpha
Helix 3
AA3
D
28 38Right-handed alpha
Helix 4
AA4
D
48 56Right-handed alpha
Helix 5
AA5
D
58 68Right-handed alpha
Helix 6
AA6
D
90 99Right-handed alpha
Helix 7
AA7
D
100 109Right-handed alpha
Helix 8
AA8
D
123 132Right-handed alpha
Helix 9
AA9
D
133 143Right-handed alpha
Helix 10
AB1
D
156 164Right-handed alpha
Helix 11
AB2
D
167 175Right-handed alpha
Helix 12
AB3
D
189 198Right-handed alpha
Helix 13
AB4
D
199 209Right-handed alpha
Helix 14
AB5
D
221 229Right-handed alpha
Helix 15
AB6
D
231 239Right-handed alpha
Helix 16
AB7
D
240 242Right-handed 310
Helix 17
AB8
D
246 262Right-handed alpha
Helix 18
AB9
D
269 285Right-handed alpha
Helix 19
AC1
D
299 303Right-handed 310
Helix 20
AC2
D
310 315Right-handed alpha
Helix 21
AC3
D
320 337Right-handed alpha
Helix 22
AC4
D
344 357Right-handed alpha
Helix 23
AC5
D
359 378Right-handed alpha
Helix 24
AC6
D
382 398Right-handed alpha
Helix 25
AC7
D
403 428Right-handed alpha
Helix 26
AC8
D
432 456Right-handed alpha
Helix 27
AC9
D
460 478Right-handed alpha
Helix 28
AD1
D
488 493Right-handed alpha
Helix 29
AD2
D
501 506Right-handed 310
Helix 30
AD3
D
511 520Right-handed alpha
Helix 31
AD4
D
534 540Right-handed alpha
Helix 32
AD5
D
548 563Right-handed alpha
Helix 33
AD6
D
582 591Right-handed alpha
Helix 34
AD7
D
596 608Right-handed alpha
Helix 35
AD8
D
617 627Right-handed alpha
Helix 36
AD9
G
-21 -17Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8WQD.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 41first strand
Strand 2
D
46 47anti-parallel
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