Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WQE entry

There are 9 chains in PDB entry 8WQE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 1	VAL 744
D	MET 1	HIS 627
E	MET 17	CYS 112
F	ASP 2	PRO 100
J	PHE 22	GLN 104
G	MET 17	CYS 112
H	ASP 2	PRO 100
I	PHE 22	GLN 104
A	THR 1	THR 1

There are151 helices in PDB entry 8WQE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	9	26	Right-handed alpha
Helix 2	AA2	C	31	47	Right-handed alpha
Helix 3	AA3	C	53	78	Right-handed alpha
Helix 4	AA4	C	82	105	Right-handed alpha
Helix 5	AA5	C	105	112	Right-handed alpha
Helix 6	AA6	C	138	152	Right-handed alpha
Helix 7	AA7	C	155	172	Right-handed alpha
Helix 8	AA8	C	177	192	Right-handed alpha
Helix 9	AA9	C	200	207	Right-handed alpha
Helix 10	AB1	C	207	230	Right-handed alpha
Helix 11	AB2	C	231	254	Right-handed alpha
Helix 12	AB3	C	255	257	Right-handed 310
Helix 13	AB4	C	258	268	Right-handed alpha
Helix 14	AB5	C	274	280	Right-handed alpha
Helix 15	AB6	C	281	288	Right-handed alpha
Helix 16	AB7	C	290	304	Right-handed alpha
Helix 17	AB8	C	307	327	Right-handed alpha
Helix 18	AB9	C	334	357	Right-handed alpha
Helix 19	AC1	C	361	377	Right-handed alpha
Helix 20	AC2	C	386	400	Right-handed alpha
Helix 21	AC3	C	407	423	Right-handed alpha
Helix 22	AC4	C	427	445	Right-handed alpha
Helix 23	AC5	C	450	470	Right-handed alpha
Helix 24	AC6	C	471	496	Right-handed alpha
Helix 25	AC7	C	530	547	Right-handed alpha
Helix 26	AC8	C	579	591	Right-handed alpha
Helix 27	AC9	C	595	604	Right-handed alpha
Helix 28	AD1	C	606	619	Right-handed alpha
Helix 29	AD2	C	654	659	Right-handed alpha
Helix 30	AD3	C	664	691	Right-handed alpha
Helix 31	AD4	C	695	708	Right-handed alpha
Helix 32	AD5	C	714	727	Right-handed alpha
Helix 33	AD6	D	2	15	Right-handed alpha
Helix 34	AD7	D	16	24	Right-handed alpha
Helix 35	AD8	D	28	35	Right-handed alpha
Helix 36	AD9	D	48	56	Right-handed alpha
Helix 37	AE1	D	58	69	Right-handed alpha
Helix 38	AE2	D	90	99	Right-handed alpha
Helix 39	AE3	D	100	111	Right-handed alpha
Helix 40	AE4	D	123	131	Right-handed alpha
Helix 41	AE5	D	133	142	Right-handed alpha
Helix 42	AE6	D	156	164	Right-handed alpha
Helix 43	AE7	D	167	175	Right-handed alpha
Helix 44	AE8	D	189	198	Right-handed alpha
Helix 45	AE9	D	199	209	Right-handed alpha
Helix 46	AF1	D	221	229	Right-handed alpha
Helix 47	AF2	D	233	241	Right-handed alpha
Helix 48	AF3	D	245	252	Right-handed alpha
Helix 49	AF4	D	254	262	Right-handed alpha
Helix 50	AF5	D	269	284	Right-handed alpha
Helix 51	AF6	D	310	317	Right-handed alpha
Helix 52	AF7	D	320	337	Right-handed alpha
Helix 53	AF8	D	340	342	Right-handed 310
Helix 54	AF9	D	343	357	Right-handed alpha
Helix 55	AG1	D	359	378	Right-handed alpha
Helix 56	AG2	D	381	398	Right-handed alpha
Helix 57	AG3	D	403	427	Right-handed alpha
Helix 58	AG4	D	432	457	Right-handed alpha
Helix 59	AG5	D	460	477	Right-handed alpha
Helix 60	AG6	D	486	492	Right-handed alpha
Helix 61	AG7	D	502	506	Right-handed 310
Helix 62	AG8	D	511	521	Right-handed alpha
Helix 63	AG9	D	534	540	Right-handed alpha
Helix 64	AH1	D	548	562	Right-handed alpha
Helix 65	AH2	D	582	592	Right-handed alpha
Helix 66	AH3	D	596	609	Right-handed alpha
Helix 67	AH4	D	617	627	Right-handed alpha
Helix 68	AH5	E	33	37	Right-handed alpha
Helix 69	AH6	E	39	46	Right-handed alpha
Helix 70	AH7	E	66	84	Right-handed alpha
Helix 71	AH8	E	102	110	Right-handed alpha
Helix 72	AH9	F	23	36	Right-handed alpha
Helix 73	AI1	J	81	86	Right-handed alpha
Helix 74	AI2	G	33	37	Right-handed alpha
Helix 75	AI3	G	66	83	Right-handed alpha
Helix 76	AI4	G	102	110	Right-handed alpha
Helix 77	AI5	H	23	36	Right-handed alpha
Helix 78	AI6	H	56	61	Right-handed alpha
Helix 79	AI7	I	53	58	Right-handed alpha
Helix 80	AI8	I	81	91	Right-handed alpha
Helix 81	AI9	A	9	26	Right-handed alpha
Helix 82	AJ1	A	31	47	Right-handed alpha
Helix 83	AJ2	A	53	67	Right-handed alpha
Helix 84	AJ3	A	68	78	Right-handed alpha
Helix 85	AJ4	A	82	105	Right-handed alpha
Helix 86	AJ5	A	105	112	Right-handed alpha
Helix 87	AJ6	A	138	151	Right-handed alpha
Helix 88	AJ7	A	155	172	Right-handed alpha
Helix 89	AJ8	A	177	191	Right-handed alpha
Helix 90	AJ9	A	200	207	Right-handed alpha
Helix 91	AK1	A	207	227	Right-handed alpha
Helix 92	AK2	A	231	250	Right-handed alpha
Helix 93	AK3	A	257	268	Right-handed alpha
Helix 94	AK4	A	274	288	Right-handed alpha
Helix 95	AK5	A	290	302	Right-handed alpha
Helix 96	AK6	A	307	329	Right-handed alpha
Helix 97	AK7	A	334	357	Right-handed alpha
Helix 98	AK8	A	361	377	Right-handed alpha
Helix 99	AK9	A	386	400	Right-handed alpha
Helix 100	AL1	A	407	423	Right-handed alpha
Helix 101	AL2	A	427	445	Right-handed alpha
Helix 102	AL3	A	450	470	Right-handed alpha
Helix 103	AL4	A	471	496	Right-handed alpha
Helix 104	AL5	A	533	547	Right-handed alpha
Helix 105	AL6	A	566	570	Right-handed 310
Helix 106	AL7	A	579	591	Right-handed alpha
Helix 107	AL8	A	595	604	Right-handed alpha
Helix 108	AL9	A	606	619	Right-handed alpha
Helix 109	AM1	A	654	658	Right-handed 310
Helix 110	AM2	A	663	692	Right-handed alpha
Helix 111	AM3	A	695	708	Right-handed alpha
Helix 112	AM4	A	714	728	Right-handed alpha
Helix 113	AM5	B	2	15	Right-handed alpha
Helix 114	AM6	B	16	25	Right-handed alpha
Helix 115	AM7	B	28	36	Right-handed alpha
Helix 116	AM8	B	48	57	Right-handed alpha
Helix 117	AM9	B	58	68	Right-handed alpha
Helix 118	AN1	B	90	99	Right-handed alpha
Helix 119	AN2	B	100	110	Right-handed alpha
Helix 120	AN3	B	123	132	Right-handed alpha
Helix 121	AN4	B	133	143	Right-handed alpha
Helix 122	AN5	B	156	164	Right-handed alpha
Helix 123	AN6	B	166	176	Right-handed alpha
Helix 124	AN7	B	189	198	Right-handed alpha
Helix 125	AN8	B	199	209	Right-handed alpha
Helix 126	AN9	B	221	229	Right-handed alpha
Helix 127	AO1	B	231	236	Right-handed alpha
Helix 128	AO2	B	237	242	Right-handed alpha
Helix 129	AO3	B	246	261	Right-handed alpha
Helix 130	AO4	B	268	284	Right-handed alpha
Helix 131	AO5	B	299	303	Right-handed 310
Helix 132	AO6	B	310	316	Right-handed alpha
Helix 133	AO7	B	321	337	Right-handed alpha
Helix 134	AO8	B	340	342	Right-handed 310
Helix 135	AO9	B	343	357	Right-handed alpha
Helix 136	AP1	B	359	377	Right-handed alpha
Helix 137	AP2	B	381	398	Right-handed alpha
Helix 138	AP3	B	403	427	Right-handed alpha
Helix 139	AP4	B	432	457	Right-handed alpha
Helix 140	AP5	B	460	478	Right-handed alpha
Helix 141	AP6	B	486	493	Right-handed alpha
Helix 142	AP7	B	502	506	Right-handed 310
Helix 143	AP8	B	511	521	Right-handed alpha
Helix 144	AP9	B	534	540	Right-handed alpha
Helix 145	AQ1	B	548	562	Right-handed alpha
Helix 146	AQ2	B	575	580	Right-handed alpha
Helix 147	AQ3	B	582	593	Right-handed alpha
Helix 148	AQ4	B	596	609	Right-handed alpha
Helix 149	AQ5	B	617	624	Right-handed alpha
Helix 150	AQ6	K	-21	-16	Right-handed 310
Helix 151	AQ7	L	-22	-17	Right-handed alpha

There are 18 sheets in PDB entry 8WQE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	510	513	first strand
Strand 2	J	30	35	parallel
Strand 3	C	551	555	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	652	first strand
Strand 2	C	574	578	parallel
Strand 3	C	561	564	anti-parallel
Strand 4	J	24	27	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	594	first strand
Strand 2	C	638	640	anti-parallel
Strand 3	C	623	625	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	731	733	first strand
Strand 2	C	741	743	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	45	46	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	85	89	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	32	first strand
Strand 2	E	18	22	anti-parallel
Strand 3	E	59	61	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	18	first strand
Strand 2	F	3	8	anti-parallel
Strand 3	F	73	79	parallel
Strand 4	F	42	46	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	70	72	first strand
Strand 2	J	78	80	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	20	first strand
Strand 2	G	30	32	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	18	first strand
Strand 2	H	3	8	anti-parallel
Strand 3	H	73	74	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	45	first strand
Strand 2	H	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	513	first strand
Strand 2	I	27	35	parallel
Strand 3	A	551	554	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	71	first strand
Strand 2	I	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	564	first strand
Strand 2	A	574	578	anti-parallel
Strand 3	A	650	651	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	594	first strand
Strand 2	A	638	640	anti-parallel
Strand 3	A	623	625	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	733	first strand
Strand 2	A	741	743	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	45	47	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WQE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQE