Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WQH entry

There are 12 chains in PDB entry 8WQH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	THR 1	THR 655
J	PHE 22	GLN 104
A	THR 1	THR 655
B	PHE 22	GLN 104
E	MET 17	CYS 112
F	ASP 2	PRO 100
D	MET 1	HIS 627
I	MET 17	CYS 112
K	ASP 2	GLU 98
G	LYS -22	LEU -16
H	MET 1	HIS 627
L	LYS -22	SER -15

There are149 helices in PDB entry 8WQH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	9	26	Right-handed alpha
Helix 2	AA2	C	31	47	Right-handed alpha
Helix 3	AA3	C	53	67	Right-handed alpha
Helix 4	AA4	C	68	79	Right-handed alpha
Helix 5	AA5	C	82	105	Right-handed alpha
Helix 6	AA6	C	105	112	Right-handed alpha
Helix 7	AA7	C	138	146	Right-handed alpha
Helix 8	AA8	C	146	151	Right-handed alpha
Helix 9	AA9	C	155	172	Right-handed alpha
Helix 10	AB1	C	177	191	Right-handed alpha
Helix 11	AB2	C	200	207	Right-handed alpha
Helix 12	AB3	C	207	228	Right-handed alpha
Helix 13	AB4	C	231	250	Right-handed alpha
Helix 14	AB5	C	255	257	Right-handed 310
Helix 15	AB6	C	258	271	Right-handed alpha
Helix 16	AB7	C	274	287	Right-handed alpha
Helix 17	AB8	C	290	304	Right-handed alpha
Helix 18	AB9	C	307	328	Right-handed alpha
Helix 19	AC1	C	334	357	Right-handed alpha
Helix 20	AC2	C	361	377	Right-handed alpha
Helix 21	AC3	C	386	400	Right-handed alpha
Helix 22	AC4	C	407	423	Right-handed alpha
Helix 23	AC5	C	427	445	Right-handed alpha
Helix 24	AC6	C	450	470	Right-handed alpha
Helix 25	AC7	C	471	497	Right-handed alpha
Helix 26	AC8	C	530	548	Right-handed alpha
Helix 27	AC9	C	579	591	Right-handed alpha
Helix 28	AD1	C	595	604	Right-handed alpha
Helix 29	AD2	C	606	619	Right-handed alpha
Helix 30	AD3	J	53	58	Right-handed alpha
Helix 31	AD4	J	81	89	Right-handed alpha
Helix 32	AD5	A	13	25	Right-handed alpha
Helix 33	AD6	A	31	47	Right-handed alpha
Helix 34	AD7	A	53	79	Right-handed alpha
Helix 35	AD8	A	82	105	Right-handed alpha
Helix 36	AD9	A	105	112	Right-handed alpha
Helix 37	AE1	A	138	146	Right-handed alpha
Helix 38	AE2	A	152	154	Right-handed 310
Helix 39	AE3	A	155	173	Right-handed alpha
Helix 40	AE4	A	177	191	Right-handed alpha
Helix 41	AE5	A	198	200	Right-handed 310
Helix 42	AE6	A	201	207	Right-handed alpha
Helix 43	AE7	A	207	229	Right-handed alpha
Helix 44	AE8	A	231	250	Right-handed alpha
Helix 45	AE9	A	255	257	Right-handed 310
Helix 46	AF1	A	258	271	Right-handed alpha
Helix 47	AF2	A	274	281	Right-handed alpha
Helix 48	AF3	A	281	288	Right-handed alpha
Helix 49	AF4	A	290	302	Right-handed alpha
Helix 50	AF5	A	307	325	Right-handed alpha
Helix 51	AF6	A	334	357	Right-handed alpha
Helix 52	AF7	A	361	377	Right-handed alpha
Helix 53	AF8	A	386	400	Right-handed alpha
Helix 54	AF9	A	407	417	Right-handed alpha
Helix 55	AG1	A	417	423	Right-handed alpha
Helix 56	AG2	A	427	445	Right-handed alpha
Helix 57	AG3	A	450	465	Right-handed alpha
Helix 58	AG4	A	471	482	Right-handed alpha
Helix 59	AG5	A	483	496	Right-handed alpha
Helix 60	AG6	A	530	547	Right-handed alpha
Helix 61	AG7	A	579	591	Right-handed alpha
Helix 62	AG8	A	595	604	Right-handed alpha
Helix 63	AG9	A	606	621	Right-handed alpha
Helix 64	AH1	B	53	58	Right-handed alpha
Helix 65	AH2	B	81	89	Right-handed alpha
Helix 66	AH3	E	33	37	Right-handed alpha
Helix 67	AH4	E	39	46	Right-handed alpha
Helix 68	AH5	E	66	83	Right-handed alpha
Helix 69	AH6	E	102	110	Right-handed alpha
Helix 70	AH7	F	23	36	Right-handed alpha
Helix 71	AH8	F	38	40	Right-handed 310
Helix 72	AH9	D	2	15	Right-handed alpha
Helix 73	AI1	D	16	25	Right-handed alpha
Helix 74	AI2	D	28	36	Right-handed alpha
Helix 75	AI3	D	48	56	Right-handed alpha
Helix 76	AI4	D	58	68	Right-handed alpha
Helix 77	AI5	D	90	98	Right-handed alpha
Helix 78	AI6	D	100	111	Right-handed alpha
Helix 79	AI7	D	123	132	Right-handed alpha
Helix 80	AI8	D	133	143	Right-handed alpha
Helix 81	AI9	D	156	163	Right-handed alpha
Helix 82	AJ1	D	166	176	Right-handed alpha
Helix 83	AJ2	D	189	198	Right-handed alpha
Helix 84	AJ3	D	199	209	Right-handed alpha
Helix 85	AJ4	D	221	229	Right-handed alpha
Helix 86	AJ5	D	231	236	Right-handed alpha
Helix 87	AJ6	D	237	242	Right-handed 310
Helix 88	AJ7	D	246	262	Right-handed alpha
Helix 89	AJ8	D	268	285	Right-handed alpha
Helix 90	AJ9	D	310	317	Right-handed alpha
Helix 91	AK1	D	320	337	Right-handed alpha
Helix 92	AK2	D	343	356	Right-handed alpha
Helix 93	AK3	D	360	377	Right-handed alpha
Helix 94	AK4	D	381	398	Right-handed alpha
Helix 95	AK5	D	403	428	Right-handed alpha
Helix 96	AK6	D	432	456	Right-handed alpha
Helix 97	AK7	D	460	478	Right-handed alpha
Helix 98	AK8	D	486	493	Right-handed alpha
Helix 99	AK9	D	502	507	Right-handed alpha
Helix 100	AL1	D	511	521	Right-handed alpha
Helix 101	AL2	D	534	541	Right-handed alpha
Helix 102	AL3	D	548	563	Right-handed alpha
Helix 103	AL4	D	582	591	Right-handed alpha
Helix 104	AL5	D	596	609	Right-handed alpha
Helix 105	AL6	D	617	627	Right-handed alpha
Helix 106	AL7	I	33	37	Right-handed alpha
Helix 107	AL8	I	39	47	Right-handed alpha
Helix 108	AL9	I	66	83	Right-handed alpha
Helix 109	AM1	I	96	110	Right-handed alpha
Helix 110	AM2	K	23	36	Right-handed alpha
Helix 111	AM3	K	38	42	Right-handed 310
Helix 112	AM4	K	56	61	Right-handed alpha
Helix 113	AM5	H	2	15	Right-handed alpha
Helix 114	AM6	H	16	25	Right-handed alpha
Helix 115	AM7	H	28	36	Right-handed alpha
Helix 116	AM8	H	48	56	Right-handed alpha
Helix 117	AM9	H	58	69	Right-handed alpha
Helix 118	AN1	H	90	99	Right-handed alpha
Helix 119	AN2	H	100	110	Right-handed alpha
Helix 120	AN3	H	123	132	Right-handed alpha
Helix 121	AN4	H	133	143	Right-handed alpha
Helix 122	AN5	H	156	163	Right-handed alpha
Helix 123	AN6	H	166	176	Right-handed alpha
Helix 124	AN7	H	189	197	Right-handed alpha
Helix 125	AN8	H	199	209	Right-handed alpha
Helix 126	AN9	H	221	229	Right-handed alpha
Helix 127	AO1	H	231	236	Right-handed alpha
Helix 128	AO2	H	237	242	Right-handed 310
Helix 129	AO3	H	246	261	Right-handed alpha
Helix 130	AO4	H	268	284	Right-handed alpha
Helix 131	AO5	H	310	317	Right-handed alpha
Helix 132	AO6	H	320	337	Right-handed alpha
Helix 133	AO7	H	343	355	Right-handed alpha
Helix 134	AO8	H	356	358	Right-handed 310
Helix 135	AO9	H	360	377	Right-handed alpha
Helix 136	AP1	H	381	398	Right-handed alpha
Helix 137	AP2	H	403	428	Right-handed alpha
Helix 138	AP3	H	432	456	Right-handed alpha
Helix 139	AP4	H	460	478	Right-handed alpha
Helix 140	AP5	H	486	493	Right-handed alpha
Helix 141	AP6	H	502	507	Right-handed alpha
Helix 142	AP7	H	511	521	Right-handed alpha
Helix 143	AP8	H	534	540	Right-handed alpha
Helix 144	AP9	H	548	562	Right-handed alpha
Helix 145	AQ1	H	577	581	Right-handed 310
Helix 146	AQ2	H	582	591	Right-handed alpha
Helix 147	AQ3	H	596	608	Right-handed alpha
Helix 148	AQ4	H	617	627	Right-handed alpha
Helix 149	AQ5	L	-22	-18	Right-handed 310

There are 15 sheets in PDB entry 8WQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	513	first strand
Strand 2	J	23	35	parallel
Strand 3	C	551	555	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	513	first strand
Strand 2	J	23	35	parallel
Strand 3	C	561	565	anti-parallel
Strand 4	C	574	578	anti-parallel
Strand 5	C	650	652	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	594	first strand
Strand 2	C	638	640	anti-parallel
Strand 3	C	623	625	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	41	42	first strand
Strand 2	J	47	48	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	70	71	first strand
Strand 2	J	79	80	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	513	first strand
Strand 2	B	23	34	parallel
Strand 3	A	552	565	anti-parallel
Strand 4	A	577	578	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	625	first strand
Strand 2	A	638	640	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	78	80	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	18	22	parallel
Strand 3	E	29	32	anti-parallel
Strand 4	F	13	18	parallel
Strand 5	F	3	8	anti-parallel
Strand 6	F	73	75	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	44	first strand
Strand 2	F	77	79	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	42	first strand
Strand 2	D	45	47	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	79	first strand
Strand 2	D	86	87	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	31	32	first strand
Strand 2	I	18	22	anti-parallel
Strand 3	I	59	61	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	13	18	first strand
Strand 2	K	3	8	anti-parallel
Strand 3	K	73	78	parallel
Strand 4	K	43	44	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	42	first strand
Strand 2	H	45	47	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WQH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQH