Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WQJ entry

There are 2 chains in PDB entry 8WQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2LEU 473
B
 ASN 2SER 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8WQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
29 34Right-handed alpha
Helix 3
AA3
A
59 64Right-handed alpha
Helix 4
AA4
A
71 85Right-handed alpha
Helix 5
AA5
A
96 110Right-handed alpha
Helix 6
AA6
A
122 141Right-handed alpha
Helix 7
AA7
A
160 167Right-handed alpha
Helix 8
AA8
A
169 174Right-handed alpha
Helix 9
AA9
A
190 195Right-handed alpha
Helix 10
AB1
A
199 219Right-handed alpha
Helix 11
AB2
A
243 253Right-handed alpha
Helix 12
AB3
A
275 281Right-handed alpha
Helix 13
AB4
A
290 294Right-handed 310
Helix 14
AB5
A
307 315Right-handed alpha
Helix 15
AB6
A
327 344Right-handed alpha
Helix 16
AB7
A
345 353Right-handed alpha
Helix 17
AB8
A
353 365Right-handed alpha
Helix 18
AB9
A
366 368Right-handed 310
Helix 19
AC1
A
400 412Right-handed alpha
Helix 20
AC2
A
433 458Right-handed alpha
Helix 21
AC3
A
464 470Right-handed alpha
Helix 22
AC4
B
9 21Right-handed alpha
Helix 23
AC5
B
29 34Right-handed alpha
Helix 24
AC6
B
59 64Right-handed alpha
Helix 25
AC7
B
71 85Right-handed alpha
Helix 26
AC8
B
96 110Right-handed alpha
Helix 27
AC9
B
122 141Right-handed alpha
Helix 28
AD1
B
160 167Right-handed alpha
Helix 29
AD2
B
169 174Right-handed alpha
Helix 30
AD3
B
190 195Right-handed alpha
Helix 31
AD4
B
199 219Right-handed alpha
Helix 32
AD5
B
243 255Right-handed alpha
Helix 33
AD6
B
275 281Right-handed alpha
Helix 34
AD7
B
290 295Right-handed 310
Helix 35
AD8
B
307 315Right-handed alpha
Helix 36
AD9
B
327 344Right-handed alpha
Helix 37
AE1
B
345 353Right-handed alpha
Helix 38
AE2
B
353 364Right-handed alpha
Helix 39
AE3
B
365 368Right-handed 310
Helix 40
AE4
B
400 413Right-handed alpha
Helix 41
AE5
B
433 458Right-handed alpha
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There are 8 sheets in PDB entry 8WQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
B
317 318anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
37 43anti-parallel
Strand 4
B
94 95parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
B
37 43parallel
Strand 3
B
46 49anti-parallel
Strand 4
B
54 56anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 120first strand
Strand 2
A
301 306anti-parallel
Strand 3
A
286 289anti-parallel
Strand 4
A
258 262parallel
Strand 5
A
223 228parallel
Strand 6
A
148 152parallel
Strand 7
A
183 186parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
B
26 27anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 377first strand
Strand 2
A
380 385anti-parallel
Strand 3
A
423 426anti-parallel
Strand 4
A
418 420anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 120first strand
Strand 2
B
301 306anti-parallel
Strand 3
B
286 289anti-parallel
Strand 4
B
258 262parallel
Strand 5
B
223 228parallel
Strand 6
B
148 152parallel
Strand 7
B
183 186parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 377first strand
Strand 2
B
380 385anti-parallel
Strand 3
B
423 426anti-parallel
Strand 4
B
418 420anti-parallel
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