Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WQQ entry

There are 2 chains in PDB entry 8WQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2TYR 244
B
 GLN 2TYR 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8WQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 39Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
59 68Right-handed alpha
Helix 4
AA4
A
70 80Right-handed alpha
Helix 5
AA5
A
84 100Right-handed alpha
Helix 6
AA6
A
105 115Right-handed alpha
Helix 7
AA7
A
135 149Right-handed alpha
Helix 8
AA8
A
151 153Right-handed 310
Helix 9
AA9
A
189 194Right-handed 310
Helix 10
AB1
A
198 203Right-handed alpha
Helix 11
AB2
A
213 221Right-handed alpha
Helix 12
AB3
A
227 243Right-handed alpha
Helix 13
AB4
B
31 39Right-handed alpha
Helix 14
AB5
B
48 57Right-handed alpha
Helix 15
AB6
B
59 68Right-handed alpha
Helix 16
AB7
B
70 80Right-handed alpha
Helix 17
AB8
B
84 100Right-handed alpha
Helix 18
AB9
B
105 115Right-handed alpha
Helix 19
AC1
B
135 149Right-handed alpha
Helix 20
AC2
B
151 153Right-handed 310
Helix 21
AC3
B
189 194Right-handed 310
Helix 22
AC4
B
198 203Right-handed alpha
Helix 23
AC5
B
213 221Right-handed alpha
Helix 24
AC6
B
227 243Right-handed alpha
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There are 4 sheets in PDB entry 8WQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
20 28anti-parallel
Strand 3
A
3 15anti-parallel
Strand 4
A
173 183parallel
Strand 5
A
155 168anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
3 15anti-parallel
Strand 3
A
20 28anti-parallel
Strand 4
A
205 212anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
20 28anti-parallel
Strand 3
B
3 15anti-parallel
Strand 4
B
173 183parallel
Strand 5
B
155 168anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
3 15anti-parallel
Strand 3
B
20 28anti-parallel
Strand 4
B
205 212anti-parallel
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