Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WQR entry

There are 2 chains in PDB entry 8WQR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 6	PRO 1038
A	MET 1	ILE 1139

There are 11 helices in PDB entry 8WQR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	8	18	Right-handed alpha
Helix 2	AA2	B	24	38	Right-handed alpha
Helix 3	AA3	B	927	931	Right-handed 310
Helix 4	AA4	B	987	989	Right-handed 310
Helix 5	AA5	A	252	256	Right-handed 310
Helix 6	AA6	A	1044	1054	Right-handed alpha
Helix 7	AA7	A	1055	1060	Right-handed 310
Helix 8	AA8	A	1069	1075	Right-handed alpha
Helix 9	AA9	A	1091	1096	Right-handed alpha
Helix 10	AB1	A	1101	1108	Right-handed alpha
Helix 11	AB2	A	1127	1135	Right-handed alpha

There are 31 sheets in PDB entry 8WQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	1033	1036	anti-parallel
Strand 3	B	1024	1028	anti-parallel
Strand 4	B	1011	1016	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	61	first strand
Strand 2	B	68	72	anti-parallel
Strand 3	B	76	80	anti-parallel
Strand 4	B	87	92	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	110	115	anti-parallel
Strand 3	B	119	124	anti-parallel
Strand 4	B	129	133	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	146	first strand
Strand 2	B	151	155	anti-parallel
Strand 3	B	159	163	anti-parallel
Strand 4	B	172	175	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	188	first strand
Strand 2	B	194	200	anti-parallel
Strand 3	B	860	866	anti-parallel
Strand 4	B	882	887	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	896	897	first strand
Strand 2	B	904	908	anti-parallel
Strand 3	B	920	924	anti-parallel
Strand 4	B	934	939	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	944	949	first strand
Strand 2	B	955	960	anti-parallel
Strand 3	B	976	981	anti-parallel
Strand 4	B	991	997	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1004	1008	first strand
Strand 2	A	1029	1032	anti-parallel
Strand 3	A	1037	1043	anti-parallel
Strand 4	A	3	10	anti-parallel
Strand 5	A	1089	1090	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	33	34	anti-parallel
Strand 3	A	39	44	anti-parallel
Strand 4	A	49	55	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	25	first strand
Strand 2	A	28	30	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	76	81	anti-parallel
Strand 3	A	86	92	anti-parallel
Strand 4	A	99	105	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	130	136	anti-parallel
Strand 3	A	139	144	anti-parallel
Strand 4	A	155	158	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	177	182	anti-parallel
Strand 3	A	188	194	anti-parallel
Strand 4	A	210	212	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	229	232	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	244	248	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	280	285	anti-parallel
Strand 4	A	300	301	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	318	first strand
Strand 2	A	321	325	anti-parallel
Strand 3	A	332	335	anti-parallel
Strand 4	A	348	352	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	365	first strand
Strand 2	A	374	378	anti-parallel
Strand 3	A	387	390	anti-parallel
Strand 4	A	712	715	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	413	first strand
Strand 2	A	424	428	anti-parallel
Strand 3	A	433	437	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	459	first strand
Strand 2	A	467	472	anti-parallel
Strand 3	A	476	480	anti-parallel
Strand 4	A	485	490	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	512	first strand
Strand 2	A	515	522	anti-parallel
Strand 3	A	525	533	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	555	560	anti-parallel
Strand 3	A	565	570	anti-parallel
Strand 4	A	575	581	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	594	first strand
Strand 2	A	600	606	anti-parallel
Strand 3	A	611	616	anti-parallel
Strand 4	A	626	629	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	641	first strand
Strand 2	A	648	652	anti-parallel
Strand 3	A	657	659	anti-parallel
Strand 4	A	669	670	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	681	first strand
Strand 2	A	691	694	anti-parallel
Strand 3	A	699	700	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	725	first strand
Strand 2	A	734	739	anti-parallel
Strand 3	A	788	792	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	764	765	first strand
Strand 2	A	805	806	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	812	817	first strand
Strand 2	A	828	834	anti-parallel
Strand 3	A	846	852	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	884	first strand
Strand 2	A	887	888	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	916	first strand
Strand 2	A	921	925	anti-parallel
Strand 3	A	930	936	anti-parallel
Strand 4	A	941	947	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	954	957	first strand
Strand 2	A	967	969	anti-parallel
Strand 3	A	973	977	anti-parallel
Strand 4	A	994	999	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WQR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQR