Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WQT entry

There are 4 chains in PDB entry 8WQT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLN 21	ARG 156
D	GLN 21	ARG 156
A	ASN 26	PHE 620
B	ASN 26	PHE 620

There are 16 helices in PDB entry 8WQT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	102	107	Right-handed 310
Helix 2	AA2	D	102	107	Right-handed 310
Helix 3	AA3	A	167	172	Right-handed 310
Helix 4	AA4	A	194	200	Right-handed alpha
Helix 5	AA5	A	238	248	Right-handed alpha
Helix 6	AA6	A	278	282	Right-handed 310
Helix 7	AA7	A	481	483	Right-handed 310
Helix 8	AA8	A	584	594	Right-handed alpha
Helix 9	AA9	A	600	604	Right-handed 310
Helix 10	AB1	B	167	172	Right-handed 310
Helix 11	AB2	B	194	200	Right-handed alpha
Helix 12	AB3	B	238	248	Right-handed alpha
Helix 13	AB4	B	278	282	Right-handed 310
Helix 14	AB5	B	481	483	Right-handed 310
Helix 15	AB6	B	584	594	Right-handed alpha
Helix 16	AB7	B	600	604	Right-handed 310

There are 18 sheets in PDB entry 8WQT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	30	36	anti-parallel
Strand 3	C	145	155	anti-parallel
Strand 4	C	129	139	anti-parallel
Strand 5	C	74	82	anti-parallel
Strand 6	C	85	93	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	49	first strand
Strand 2	C	57	65	anti-parallel
Strand 3	C	113	121	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	26	first strand
Strand 2	D	30	36	anti-parallel
Strand 3	D	145	155	anti-parallel
Strand 4	D	129	139	anti-parallel
Strand 5	D	74	82	anti-parallel
Strand 6	D	85	93	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	49	first strand
Strand 2	D	57	65	anti-parallel
Strand 3	D	113	121	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	58	59	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	105	107	parallel
Strand 3	A	129	131	parallel
Strand 4	A	153	155	parallel
Strand 5	A	178	180	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	216	217	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	230	231	parallel
Strand 3	A	257	259	parallel
Strand 4	A	287	289	parallel
Strand 5	A	312	314	parallel
Strand 6	A	333	336	parallel
Strand 7	A	354	357	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	411	first strand
Strand 2	A	431	433	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	486	first strand
Strand 2	A	508	509	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	500	first strand
Strand 2	A	522	524	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	58	59	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	105	107	parallel
Strand 3	B	129	131	parallel
Strand 4	B	153	155	parallel
Strand 5	B	178	180	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	216	217	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	230	231	parallel
Strand 3	B	257	259	parallel
Strand 4	B	287	289	parallel
Strand 5	B	312	314	parallel
Strand 6	B	333	336	parallel
Strand 7	B	354	357	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	411	first strand
Strand 2	B	431	433	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	486	first strand
Strand 2	B	508	509	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	500	first strand
Strand 2	B	522	524	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WQT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQT