Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8WQW entry

There are 6 chains in PDB entry 8WQW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 627	ALA 818
B	GLN 1	LYS 224
C	ASP 1	CYS 214
D	ASP 16	ASN 344
E	SER 2	LEU 108
F	GLU 1	SER 123

There are 24 helices in PDB entry 8WQW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	650	654	Right-handed 310
Helix 2	AA2	A	693	697	Right-handed 310
Helix 3	AA3	A	698	702	Right-handed 310
Helix 4	AA4	A	773	778	Right-handed alpha
Helix 5	AA5	A	788	792	Right-handed 310
Helix 6	AA6	A	809	817	Right-handed alpha
Helix 7	AA7	B	28	32	Right-handed 310
Helix 8	AA8	B	133	137	Right-handed 310
Helix 9	AA9	B	162	164	Right-handed 310
Helix 10	AB1	B	193	198	Right-handed alpha
Helix 11	AB2	C	79	83	Right-handed 310
Helix 12	AB3	C	122	128	Right-handed alpha
Helix 13	AB4	C	183	187	Right-handed alpha
Helix 14	AB5	D	43	52	Right-handed alpha
Helix 15	AB6	D	54	64	Right-handed alpha
Helix 16	AB7	D	75	80	Right-handed 310
Helix 17	AB8	D	97	103	Right-handed alpha
Helix 18	AB9	D	160	163	Right-handed 310
Helix 19	AC1	D	187	199	Right-handed alpha
Helix 20	AC2	D	252	256	Right-handed 310
Helix 21	AC3	D	267	277	Right-handed alpha
Helix 22	AC4	D	283	290	Right-handed alpha
Helix 23	AC5	E	25	29	Right-handed 310
Helix 24	AC6	F	89	93	Right-handed 310

There are 26 sheets in PDB entry 8WQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	631	first strand
Strand 2	A	720	729	anti-parallel
Strand 3	A	635	637	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	631	first strand
Strand 2	A	720	729	anti-parallel
Strand 3	A	740	744	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	649	first strand
Strand 2	A	705	713	anti-parallel
Strand 3	A	684	689	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	130	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	182	191	anti-parallel
Strand 4	B	169	171	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	130	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	182	191	anti-parallel
Strand 4	B	175	176	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	201	204	anti-parallel
Strand 3	B	214	216	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	103	106	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	45	49	anti-parallel
Strand 3	C	33	38	anti-parallel
Strand 4	C	85	90	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	129	137	anti-parallel
Strand 3	C	174	182	anti-parallel
Strand 4	C	159	163	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	191	197	anti-parallel
Strand 3	C	205	210	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	73	first strand
Strand 2	D	167	168	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	172	175	parallel
Strand 3	D	129	134	parallel
Strand 4	D	137	142	anti-parallel
Strand 5	D	110	111	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	157	158	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	180	first strand
Strand 2	D	331	341	anti-parallel
Strand 3	D	205	208	anti-parallel
Strand 4	D	211	212	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	180	first strand
Strand 2	D	331	341	anti-parallel
Strand 3	D	223	231	anti-parallel
Strand 4	D	238	240	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	248	first strand
Strand 2	D	317	321	anti-parallel
Strand 3	D	326	327	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	258	first strand
Strand 2	D	309	310	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	103	108	parallel
Strand 3	E	83	89	anti-parallel
Strand 4	E	33	37	anti-parallel
Strand 5	E	44	47	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	103	108	parallel
Strand 3	E	83	89	anti-parallel
Strand 4	E	98	99	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	23	first strand
Strand 2	E	69	74	anti-parallel
Strand 3	E	61	66	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	80	86	anti-parallel
Strand 4	F	70	75	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	117	121	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	117	121	parallel
Strand 3	F	94	100	anti-parallel
Strand 4	F	112	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8WQW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8WQW