Analysis of interatomic Contacts of Structural Units in PDB entry:
8WRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WRD entry

There are 3 chains in PDB entry 8WRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7GLU 477
L
 ASP 1GLU 213
H
 GLU 1ARG 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8WRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 14Right-handed alpha
Helix 2
AA2
A
19 41Right-handed alpha
Helix 3
AA3
A
128 157Right-handed alpha
Helix 4
AA4
A
158 177Right-handed alpha
Helix 5
AA5
A
181 211Right-handed alpha
Helix 6
AA6
A
213 246Right-handed alpha
Helix 7
AA7
A
249 270Right-handed alpha
Helix 8
AA8
A
284 290Right-handed alpha
Helix 9
AA9
A
291 324Right-handed alpha
Helix 10
AB1
A
326 334Right-handed alpha
Helix 11
AB2
A
334 352Right-handed alpha
Helix 12
AB3
A
356 375Right-handed alpha
Helix 13
AB4
A
376 378Right-handed 310
Helix 14
AB5
A
380 414Right-handed alpha
Helix 15
AB6
A
420 447Right-handed alpha
Helix 16
AB7
A
448 464Right-handed alpha
Helix 17
AB8
A
465 471Right-handed 310
Helix 18
AB9
L
79 83Right-handed 310
Helix 19
AC1
L
121 127Right-handed alpha
Helix 20
AC2
L
183 189Right-handed alpha
Helix 21
AC3
H
28 32Right-handed 310
Helix 22
AC4
H
62 65Right-handed 310
Helix 23
AC5
H
87 91Right-handed 310
Helix 24
AC6
H
167 169Right-handed 310
Helix 25
AC7
H
197 202Right-handed alpha
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There are 11 sheets in PDB entry 8WRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 106parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 24first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 67anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
53 54first strand
Strand 2
L
45 49anti-parallel
Strand 3
L
33 38anti-parallel
Strand 4
L
85 90anti-parallel
Strand 5
L
97 98anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
145 150first strand
Strand 2
L
191 197anti-parallel
Strand 3
L
205 210anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 12first strand
Strand 2
H
118 122parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
57 60anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
9 12first strand
Strand 2
H
118 122parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
108 114anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 135first strand
Strand 2
H
146 156anti-parallel
Strand 3
H
186 195anti-parallel
Strand 4
H
174 176anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
131 135first strand
Strand 2
H
146 156anti-parallel
Strand 3
H
186 195anti-parallel
Strand 4
H
180 181anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
162 165first strand
Strand 2
H
205 210anti-parallel
Strand 3
H
215 220anti-parallel
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