Analysis of interatomic Contacts of Structural Units in PDB entry:
8WRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WRJ entry

There is 1 chain in PDB entry 8WRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3LEU 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8WRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 30Right-handed alpha
Helix 2
AA2
A
40 46Right-handed alpha
Helix 3
AA3
A
72 78Right-handed alpha
Helix 4
AA4
A
78 102Right-handed alpha
Helix 5
AA5
A
119 127Right-handed alpha
Helix 6
AA6
A
138 150Right-handed alpha
Helix 7
AA7
A
174 178Right-handed 310
Helix 8
AA8
A
181 186Right-handed 310
Helix 9
AA9
A
187 198Right-handed alpha
Helix 10
AB1
A
199 200Right-handed 310
Helix 11
AB2
A
201 205Right-handed 310
Helix 12
AB3
A
213 216Right-handed 310
Helix 13
AB4
A
217 228Right-handed alpha
Helix 14
AB5
A
264 274Right-handed alpha
Helix 15
AB6
A
292 306Right-handed alpha
Helix 16
AB7
A
315 319Right-handed 310
Helix 17
AB8
A
342 348Right-handed alpha
Helix 18
AB9
A
360 371Right-handed alpha
Helix 19
AC1
A
382 393Right-handed alpha
Helix 20
AC2
A
410 423Right-handed alpha
Helix 21
AC3
A
424 446Right-handed alpha
Helix 22
AC4
A
449 463Right-handed alpha
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There are 2 sheets in PDB entry 8WRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
33 39parallel
Strand 3
A
5 9parallel
Strand 4
A
108 114parallel
Strand 5
A
130 135parallel
Strand 6
A
207 210parallel
Strand 7
A
230 232parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
309 313parallel
Strand 3
A
280 284parallel
Strand 4
A
352 357parallel
Strand 5
A
374 376parallel
Strand 6
A
397 399parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il