Analysis of interatomic Contacts of Structural Units in PDB entry:
8WRL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WRL entry

There are 2 chains in PDB entry 8WRL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19PRO 612
B
 ASN 334LYS 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 8WRL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 52Right-handed alpha
Helix 2
AA2
A
55 81Right-handed alpha
Helix 3
AA3
A
90 101Right-handed alpha
Helix 4
AA4
A
103 108Right-handed 310
Helix 5
AA5
A
109 130Right-handed alpha
Helix 6
AA6
A
147 154Right-handed alpha
Helix 7
AA7
A
157 193Right-handed alpha
Helix 8
AA8
A
198 204Right-handed alpha
Helix 9
AA9
A
218 252Right-handed alpha
Helix 10
AB1
A
265 267Right-handed 310
Helix 11
AB2
A
275 282Right-handed 310
Helix 12
AB3
A
293 300Right-handed alpha
Helix 13
AB4
A
304 319Right-handed alpha
Helix 14
AB5
A
324 328Right-handed 310
Helix 15
AB6
A
365 383Right-handed alpha
Helix 16
AB7
A
389 393Right-handed 310
Helix 17
AB8
A
399 413Right-handed alpha
Helix 18
AB9
A
414 422Right-handed alpha
Helix 19
AC1
A
431 447Right-handed alpha
Helix 20
AC2
A
448 466Right-handed alpha
Helix 21
AC3
A
473 481Right-handed alpha
Helix 22
AC4
A
503 508Right-handed alpha
Helix 23
AC5
A
513 530Right-handed alpha
Helix 24
AC6
A
538 542Right-handed 310
Helix 25
AC7
A
547 559Right-handed alpha
Helix 26
AC8
A
565 570Right-handed alpha
Helix 27
AC9
A
581 588Right-handed alpha
Helix 28
AD1
A
588 599Right-handed alpha
Helix 29
AD2
B
364 371Right-handed 310
Helix 30
AD3
B
502 506Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8WRL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
356 357anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
394 402anti-parallel
Strand 3
B
508 516anti-parallel
Strand 4
B
431 437anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 362first strand
Strand 2
B
524 525parallel
Strand 3
B
391 392anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il