Analysis of interatomic Contacts of Structural Units in PDB entry:
8WRQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WRQ entry

There are 4 chains in PDB entry 8WRQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 54ALA 649
B
 C -19 U 10
C
 A -10 A 9
D
 T -9 C 0
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8WRQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 74Right-handed 310
Helix 2
AA2
A
75 90Right-handed alpha
Helix 3
AA3
A
92 99Right-handed alpha
Helix 4
AA4
A
105 117Right-handed alpha
Helix 5
AA5
A
125 141Right-handed alpha
Helix 6
AA6
A
142 156Right-handed alpha
Helix 7
AA7
A
201 205Right-handed 310
Helix 8
AA8
A
234 238Right-handed 310
Helix 9
AA9
A
247 251Right-handed 310
Helix 10
AB1
A
266 270Right-handed 310
Helix 11
AB2
A
281 291Right-handed alpha
Helix 12
AB3
A
309 319Right-handed alpha
Helix 13
AB4
A
327 332Right-handed alpha
Helix 14
AB5
A
333 335Right-handed 310
Helix 15
AB6
A
369 381Right-handed alpha
Helix 16
AB7
A
422 437Right-handed alpha
Helix 17
AB8
A
438 449Right-handed alpha
Helix 18
AB9
A
452 465Right-handed alpha
Helix 19
AC1
A
468 478Right-handed alpha
Helix 20
AC2
A
489 492Right-handed 310
Helix 21
AC3
A
493 502Right-handed alpha
Helix 22
AC4
A
527 536Right-handed alpha
Helix 23
AC5
A
546 556Right-handed alpha
Helix 24
AC6
A
558 588Right-handed alpha
Helix 25
AC7
A
627 637Right-handed alpha
Helix 26
AC8
A
637 642Right-handed alpha
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There are 3 sheets in PDB entry 8WRQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
340 342anti-parallel
Strand 3
A
347 351anti-parallel
Strand 4
A
60 68anti-parallel
Strand 5
A
303 308anti-parallel
Strand 6
A
295 300anti-parallel
Strand 7
A
207 208anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 420first strand
Strand 2
A
397 406anti-parallel
Strand 3
A
384 391anti-parallel
Strand 4
A
592 597parallel
Strand 5
A
646 649parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 511first strand
Strand 2
A
524 525anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il