Analysis of interatomic Contacts of Structural Units in PDB entry:
8WRT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WRT entry

There are 2 chains in PDB entry 8WRT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 53ALA 649
B
 C -21 C 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8WRT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 74Right-handed 310
Helix 2
AA2
A
75 87Right-handed alpha
Helix 3
AA3
A
92 99Right-handed alpha
Helix 4
AA4
A
105 117Right-handed alpha
Helix 5
AA5
A
129 169Right-handed alpha
Helix 6
AA6
A
201 205Right-handed 310
Helix 7
AA7
A
234 238Right-handed 310
Helix 8
AA8
A
250 254Right-handed 310
Helix 9
AA9
A
272 278Right-handed alpha
Helix 10
AB1
A
309 319Right-handed alpha
Helix 11
AB2
A
328 335Right-handed alpha
Helix 12
AB3
A
422 451Right-handed alpha
Helix 13
AB4
A
452 464Right-handed alpha
Helix 14
AB5
A
465 478Right-handed alpha
Helix 15
AB6
A
492 503Right-handed alpha
Helix 16
AB7
A
540 556Right-handed alpha
Helix 17
AB8
A
558 587Right-handed alpha
Helix 18
AB9
A
613 619Right-handed alpha
Helix 19
AC1
A
627 641Right-handed alpha
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There are 2 sheets in PDB entry 8WRT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
340 341anti-parallel
Strand 3
A
347 351anti-parallel
Strand 4
A
60 68anti-parallel
Strand 5
A
303 308anti-parallel
Strand 6
A
295 300anti-parallel
Strand 7
A
207 208anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 419first strand
Strand 2
A
399 404anti-parallel
Strand 3
A
384 389anti-parallel
Strand 4
A
592 594parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il