Analysis of interatomic Contacts of Structural Units in PDB entry:
8WRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8WRU entry

There are 4 chains in PDB entry 8WRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 908
B
 G -36 C 19
C
 G -17 T 8
D
 A 1 G 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 8WRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 41Right-handed alpha
Helix 2
AA2
A
57 69Right-handed alpha
Helix 3
AA3
A
77 88Right-handed alpha
Helix 4
AA4
A
100 103Right-handed 310
Helix 5
AA5
A
104 110Right-handed alpha
Helix 6
AA6
A
125 136Right-handed alpha
Helix 7
AA7
A
139 150Right-handed alpha
Helix 8
AA8
A
163 171Right-handed alpha
Helix 9
AA9
A
173 185Right-handed alpha
Helix 10
AB1
A
187 199Right-handed alpha
Helix 11
AB2
A
211 253Right-handed alpha
Helix 12
AB3
A
256 259Right-handed 310
Helix 13
AB4
A
260 273Right-handed alpha
Helix 14
AB5
A
316 331Right-handed alpha
Helix 15
AB6
A
447 459Right-handed alpha
Helix 16
AB7
A
522 552Right-handed alpha
Helix 17
AB8
A
559 565Right-handed alpha
Helix 18
AB9
A
567 572Right-handed alpha
Helix 19
AC1
A
579 606Right-handed alpha
Helix 20
AC2
A
610 614Right-handed 310
Helix 21
AC3
A
621 642Right-handed alpha
Helix 22
AC4
A
660 689Right-handed alpha
Helix 23
AC5
A
723 736Right-handed alpha
Helix 24
AC6
A
782 796Right-handed alpha
Helix 25
AC7
A
820 831Right-handed alpha
Helix 26
AC8
A
881 899Right-handed alpha
Helix 27
AC9
A
900 903Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 8WRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
432 440anti-parallel
Strand 3
A
417 429anti-parallel
Strand 4
A
349 352anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
432 440anti-parallel
Strand 3
A
417 429anti-parallel
Strand 4
A
403 408anti-parallel
Strand 5
A
391 394anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
336 337parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
368 374anti-parallel
Strand 3
A
379 383anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 517first strand
Strand 2
A
485 491anti-parallel
Strand 3
A
473 479anti-parallel
Strand 4
A
693 697parallel
Strand 5
A
739 743parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 503first strand
Strand 2
A
506 509anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 761first strand
Strand 2
A
768 773anti-parallel
Strand 3
A
776 781anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 848first strand
Strand 2
A
837 840anti-parallel
Strand 3
A
814 816anti-parallel
Strand 4
A
803 808anti-parallel
Strand 5
A
869 872anti-parallel
Strand 6
A
879 880anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il